Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1418 ATGGATTCCGAAGAGGACTCATCACAGCAGCAGCACCACCTTTCACAGTGGGACACCTACCTAGTCGGCTTCGTCACCGCCAACATCGTCGGCCTCAAATACTACGCCGGCACCATCAGCGGCCGCGAGTTCGTCGGCCTCATCCGTGAACCCCACAACGCCTACGACCCAAACGCCATCAAAGTCCTCAACACCCGCGCCCTCCAAGTCGGCCACATCGAACGCGCCGCCGCCGCTGTCCTCGCTCCTCTCATCGACTCCCACCTCATCACCGTCGAGGGAATCGTCCCTAACCCTCGCTCCGCCGCCAATAAATTCCGCATCCCCTGCCAGGTCCATGTCTTCGCTCACTCCTCCGCCTTCGCCGCCGTCACCGACGCCTTCGCCAACTCCCCTCTCCACCTCATTTCCCAATCTGATCCCTCCTTCACACTATCCGACTCTATTGCTGTCAAAGAAACCCGCGCTGAGAACAAGTTCAAATCGTTAGACGCTGTGTTCAAATTCGTCGAGGAGAATGTGAAGAATCGTGTTCTACAACCGCTGCAACCTCCGCCCAATGTGATTAAAACTGAGCTTCTGCAGCATCAGAAGGAAGCCCTAGGTTGGCTTGTTCACCGGGAAACCTCCGGCGATTTGCCGCCGTTTTGGGAGGAGAGGGATAATAGCTTCGTTAACGCGCTGACGAATTATCAGACCAACACGAGGCCAGAGCCTCTCCGTGGTGGGATTTTTGCTGATGCTATGGGGTTAGGGAAGACTCTAACATTGCTTTCATTGATTGGTTTGGATTTAGATAGAAGGGAGAATGCGAAACGGGGTAGGAAAAGAACTAGAAATGGAGGTAGTGGTAGTGGTAGTGGTAGTAGTTCAGAGGATATGGAGAGTGATGCAACATTGATTGTGTGCACTCCTTCTGCAATGTCTACTTGGGTAGCACAACTAGAAGAGCACACTTTGCGCGGGGCGTTGAAGACGTATATATATTATGGGGATAGGAGGACTGGAGATGCTGAGGAACTTAAGAAGTATGATGTGGTGCTGACTACTTACTCTACTTTGGCTAATGAATTGCGGTTGGCCGAGGCTCCGGTGAAGAGAGTAGTGTGGTGGAGAGTTGTTTTGGATGAAGCGCACACGATTAAGAATGTTAATGCTGGACAGAGTCAAGCTGTTATCGCGCTGAAGGCTAAACGGAGGTGGGCTGTAACGGGGACGCTGGTTCAAAATGGTTACTCTGATTTGTTTTCTCTTATGGCATTTCTGCGTTTTGAACCGTTTTCTATAAAGAACTATTGGCAGAGCTTGGTGCAAAGGCCTCTTAGTCAGGGCAATGCGAGAGGGTTAAATCGCTTGCAGGTTTTGATGGCAGCGATTTCATTACGAAGAACAAAAGAGATGTCATCAGTGGGGCTGCCACTAAAAACCATAGAGACTCATCATATTGAACTTTCTGCTGAAGAACGTAAAATGTATGATGAGGTGAAGGAGGAAGCAGATGCGATTTTGTTACGTTATGGCAGTAGTGAGGGTCTAGTGTACAGTTATTCTGCTGTAATAAGTATGATTCTAAGACTTCGGCAAATCTGTACTGATTTTGCTTTGTGCCCTTCAGATTTCAAGTCGCATCTACTCCCTTCAAGTGATATTGAAGATGTTTCCAAGAACCCTGAGTTGCTGCAAACATTAGTTAGAATTCTGCAAGATGGTGAAGATTTTGAATGTCCAATTTGTATATCTCCTCCAACTGATATAGTAATTACATGCTGTGCTCACATTTTCTGCCAACCTTGTATTCTGAAAACTCTACAACGCAGCAATCCCCGTTGTCCTCTTTGTCGTCGGTCCCTCTCCGAATCTGACTTGTTCTCAGCTCCTCCTGAATTGTCTAATGTCGATACCACTGAACTGTGCTCATCAGAAAAAGGGTTATCTACCAAAGCTTTTACTCTTATAAAACTTCTTACAGAGTCGAGAGATCAGGATCCAACTGCAAAATCAGTTGTATTTTCACAATTCAGTAAGTTGTTGCTGTTGTTGGAAGAACCTCTAAAAGCAGCTGGTTTCAAGACTTTGCGTCTCGATGGGACAATGAATGCTAAACAGAGAGCTAATGTTATTGAGCAGTTTCAAGGCTCAGAAAAGGATGGACCAATGGTTCTCCTTGCAAGTCTCAGAACTTCAAGTACAGGTATAAATCTCACTGCTGCGTCTAGAGTGTACTTAATGGAGCCATGGTGGAACACAGGAGTTGAGGAACAGGCAATCGATCGCGTTCACCGCATTGGACAGAAAGAGGCTGTGAAGGTTGACTCCTTTAGGCAACCTGAAAAAAGAAATATAATACAGGGGCAGAGCTGTTAG 2364 0.4734 MDSEEDSSQQQHHLSQWDTYLVGFVTANIVGLKYYAGTISGREFVGLIREPHNAYDPNAIKVLNTRALQVGHIERAAAAVLAPLIDSHLITVEGIVPNPRSAANKFRIPCQVHVFAHSSAFAAVTDAFANSPLHLISQSDPSFTLSDSIAVKETRAENKFKSLDAVFKFVEENVKNRVLQPLQPPPNVIKTELLQHQKEALGWLVHRETSGDLPPFWEERDNSFVNALTNYQTNTRPEPLRGGIFADAMGLGKTLTLLSLIGLDLDRRENAKRGRKRTRNGGSGSGSGSSSEDMESDATLIVCTPSAMSTWVAQLEEHTLRGALKTYIYYGDRRTGDAEELKKYDVVLTTYSTLANELRLAEAPVKRVVWWRVVLDEAHTIKNVNAGQSQAVIALKAKRRWAVTGTLVQNGYSDLFSLMAFLRFEPFSIKNYWQSLVQRPLSQGNARGLNRLQVLMAAISLRRTKEMSSVGLPLKTIETHHIELSAEERKMYDEVKEEADAILLRYGSSEGLVYSYSAVISMILRLRQICTDFALCPSDFKSHLLPSSDIEDVSKNPELLQTLVRILQDGEDFECPICISPPTDIVITCCAHIFCQPCILKTLQRSNPRCPLCRRSLSESDLFSAPPELSNVDTTELCSSEKGLSTKAFTLIKLLTESRDQDPTAKSVVFSQFSKLLLLLEEPLKAAGFKTLRLDGTMNAKQRANVIEQFQGSEKDGPMVLLASLRTSSTGINLTAASRVYLMEPWWNTGVEEQAIDRVHRIGQKEAVKVDSFRQPEKRNIIQGQSC* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1418 787 Pfam SNF2-related domain 196 532 IPR000330 GO:0005524|GO:0140658
Lja1g1418 787 ProSitePatterns Zinc finger RING-type signature. 590 599 IPR017907 -
Lja1g1418 787 ProSiteProfiles Zinc finger RING-type profile. 575 614 IPR001841 -
Lja1g1418 787 CDD SF2_C_SNF 644 770 - -
Lja1g1418 787 Pfam Zinc finger, C3HC4 type (RING finger) 572 618 - -
Lja1g1418 787 SMART helicmild6 678 763 IPR001650 -
Lja1g1418 787 Gene3D - 473 774 IPR027417 -
Lja1g1418 787 MobiDBLite consensus disorder prediction 270 296 - -
Lja1g1418 787 Gene3D - 226 464 IPR038718 -
Lja1g1418 787 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 561 632 IPR013083 -
Lja1g1418 787 Pfam HIRAN domain 23 115 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lja1g1418 787 SMART ultradead3 189 432 IPR014001 -
Lja1g1418 787 SMART HIRAN_2 22 118 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lja1g1418 787 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 11 269 - -
Lja1g1418 787 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 286 773 - -
Lja1g1418 787 SUPERFAMILY RING/U-box 563 620 - -
Lja1g1418 787 CDD RING-HC_HLTF 574 614 - -
Lja1g1418 787 Gene3D - 15 135 - -
Lja1g1418 787 Pfam Helicase conserved C-terminal domain 651 763 IPR001650 -
Lja1g1418 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 777 IPR027417 -
Lja1g1418 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 463 IPR027417 -
Lja1g1418 787 SMART ring_2 575 613 IPR001841 -
Lja1g1418 787 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 234 425 IPR014001 -
Lja1g1418 787 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 11 269 - -
Lja1g1418 787 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 286 773 - -
Lja1g1418 787 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 650 787 IPR001650 -
Lja1g1418 787 MobiDBLite consensus disorder prediction 280 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1418 Lja-Chr1 15118901 15124703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1418 6 770 RAD5 or RAD16-like Gene Family AT5G05130 58.491 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g1418 SNF2_N 3e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1418 K15711 - vvi:100263696 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1418 1 15118901 15124703 Lja1g1418 1 15118901 15124703 ECH