Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1417 ATGGCATCAAGCTCAATGTCAGCATCTGGCTCATGGAGTGCTAAGGACAATAAAGCCTTTGAAAGAGCTCTAGCTGTTTATGACAAAGTTACCCCTGACCGCTGGTACAATGTTGCCCATGCTGTTGGTGGCAAAACTCCAGAGGAAGTGAAGAAGCACTATGAGCTACTTGTCCAGGATGTTAAGCAAATTGAGTCAGGGCAAGTTCCATTGCCAAATTACAAGAAAACTGGAGAGGAGAAAAGGCTGAAGAACCTGAGTCTCCACTGA 270 0.4556 MASSSMSASGSWSAKDNKAFERALAVYDKVTPDRWYNVAHAVGGKTPEEVKKHYELLVQDVKQIESGQVPLPNYKKTGEEKRLKNLSLH* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1417 89 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Lja1g1417 89 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 87 - -
Lja1g1417 89 MobiDBLite consensus disorder prediction 69 89 - -
Lja1g1417 89 CDD SANT 18 58 IPR001005 -
Lja1g1417 89 MobiDBLite consensus disorder prediction 75 89 - -
Lja1g1417 89 SMART sant 8 60 IPR001005 -
Lja1g1417 89 Gene3D - 2 71 - -
Lja1g1417 89 SUPERFAMILY Homeodomain-like 11 65 IPR009057 -
Lja1g1417 89 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Lja1g1417 89 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Lja1g1417 89 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 87 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1417 Lja-Chr1 15114773 15115461 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja1g1417 Myb_DNA-binding 1.9e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1417 - - gmx:100818368 150.599