Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1408 ATGTTGCAGCAGCATCAGATTGGGAATATGGAGAACTCATCAGAGCTGTTCCAATTCCTTACTGGCACCAACAACAACGCCTCCTTCTTTGAGGCTCAGCCACCATCGGTGCAGAACAGCTTTTGCAGTTCCTCTAATAACAACTATTACCCCTTGGAAGTGTCTGAAATTACAGAAGCAGCACCCTCCCAGCAAGATAGAAACCTAGCAGCTATGAGGAACCACAAGGAAGCTGAGAAGAGGAGGAGGGAGAGAATTAACTCCCACCTCGATGCCCTTCGCACCCTTCTCCCTTGTAATTCCAAGACAGACAAGGCTTCACTTCTTGCAAAGGTTGTCCAGCGAGTGAAGGAGCTGAAGCAGCAAACATCTGAAATCACCAACCTGGAAACTGTTCCATCCGAAACAGACGAGATCAGCGTCCTCTCCAGCGGTGGCGCCGGCGATGGTAGGCTCATATTCAAGGCATCACTGTGCTGTGAGGACCGCTCCGACCTCATCCCGGACCTCATTGAGATCCTCAAGTCACTTCATCTGAAGACCCTCAAAGCTGAAATGGCCACACTCGGAGGAAGAACGCGCAACGTTCTCATCGTCGCAGCTGAGAAAGACCACAGCATTGAATCCATCCATTTCCTTCAGAACTCGCTCAGATCATTGCTGGACCGGTCCAGCTCCGGCGACAGATCAAAACGTCGTCGTGGGTTAGACCGAACAATGATGGCATGA 729 0.5089 MLQQHQIGNMENSSELFQFLTGTNNNASFFEAQPPSVQNSFCSSSNNNYYPLEVSEITEAAPSQQDRNLAAMRNHKEAEKRRRERINSHLDALRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITNLETVPSETDEISVLSSGGAGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMATLGGRTRNVLIVAAEKDHSIESIHFLQNSLRSLLDRSSSGDRSKRRRGLDRTMMA* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1408 242 MobiDBLite consensus disorder prediction 224 242 - -
Lja1g1408 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 73 128 IPR036638 GO:0046983
Lja1g1408 242 CDD bHLH_AtAIG1_like 65 141 - -
Lja1g1408 242 Pfam Helix-loop-helix DNA-binding domain 74 119 IPR011598 GO:0046983
Lja1g1408 242 Gene3D - 65 130 IPR036638 GO:0046983
Lja1g1408 242 CDD ACT_UUR-ACR-like 157 221 - -
Lja1g1408 242 MobiDBLite consensus disorder prediction 222 242 - -
Lja1g1408 242 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 13 241 - -
Lja1g1408 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 119 IPR011598 GO:0046983
Lja1g1408 242 PANTHER TRANSCRIPTION FACTOR BHLH30 13 241 IPR045847 GO:0003700|GO:0006355
Lja1g1408 242 SMART finulus 76 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1408 Lja-Chr1 14998619 15000746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1408 16 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 61.468 8.04e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g1408 HLH 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1408 - K22484 gmx:100802566 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1408 1 14998619 15000746 Lja1g1408 1 14998619 15000746 ECH