Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1402 ATGCCTTACCTCGTCCGTGAGAATCTCCTCATCGGAAACATCGGCGACGCGGCGGAGGTTCTCCAAACCGGCACCGTCGACAACCACCACGTCACCCACGTCCTCTCCGTCCTCAGCTCCGCCTCCGTCTCCTTCTTCTCCGAATGGCGCACCGGCTTCTCCGTCCCCGTCAAGGAGATCAGTAAACTCCACGTCGCTGATGTCGACTCCGCCGGCGGGAAAACTGCTCTCTCCCCTGAGAAGCTCCTCTACTCGCTTGAGTACGCCGGACACGACCTCAAGCTTGTTCGCATGGCGGTTCCTCTTAGAGATACCGAGAGCGAGGACTTGCTTGATTACCTCGAGGTTTGCGTCGATTTCGTTGATCGGAGTAGGAAGGAAGGTGGAAAGGTTTTGGTTCACTGCTTCGCCGGAGTTTCTAGAAGTGCGGCGGTGATAACAGCTTATTTGATGAAAACGGAGAATCTGTCACAAGAAGATGCGCTTGAATCGTTAAGGCAGAAGTGTGAATTTGTTTGTCCCAATGATGGTTTTCTAGAGCAGTTGAAAATGTTTGAGGAGATGGGATTCAAGGTTGATCAATCCAGCCCTATATACAAGCGCTTTCGTTTAAAAGTACTAGGCGAGAGTCATTTCTCAGGGCTGAGGATAGACAGTTCTAAACTTGGTGAAGATCCAGGCATGCCTGTTGAAAATTCTCCAGAGGTACAAGAACCTGTCAAAGTAGAAAATAACCGTAGCCCTACATATCGTTGTAAGAAGTGCCGACGGATTGTCGCGTTGCAAGAACATGTCGTAGATCATATTCCCGGTGAGGGCGAGACGTCCTTTGGGTGGCACAAGCGGAGAAGTGGGAACCCTTTTAACAAGTCTAATGAATCTGAGTGTTCGTCCATATTTATTGAGCCTCTAAGATGGATGAAAGCTGTTGAGGAAGGCGCGTTGGAGGGAAAACTGTCCTGTGTTCACTGTGATGCCCGTTTGGGATACTTCAATTGGGCAGGCATACAGTGCAGCTGCGGAAGCTGGATAACCCCAGCTTTTCAACTCCACCAAAGCCGGGTAGATATAAGCCGTGTATAA 1083 0.5023 MPYLVRENLLIGNIGDAAEVLQTGTVDNHHVTHVLSVLSSASVSFFSEWRTGFSVPVKEISKLHVADVDSAGGKTALSPEKLLYSLEYAGHDLKLVRMAVPLRDTESEDLLDYLEVCVDFVDRSRKEGGKVLVHCFAGVSRSAAVITAYLMKTENLSQEDALESLRQKCEFVCPNDGFLEQLKMFEEMGFKVDQSSPIYKRFRLKVLGESHFSGLRIDSSKLGEDPGMPVENSPEVQEPVKVENNRSPTYRCKKCRRIVALQEHVVDHIPGEGETSFGWHKRRSGNPFNKSNESECSSIFIEPLRWMKAVEEGALEGKLSCVHCDARLGYFNWAGIQCSCGSWITPAFQLHQSRVDISRV* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1402 360 ProSitePatterns Tyrosine specific protein phosphatases active site. 133 143 IPR016130 GO:0016311|GO:0016791
Lja1g1402 360 Pfam Dual specificity phosphatase, catalytic domain 95 187 IPR000340 GO:0008138|GO:0016311
Lja1g1402 360 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 356 - -
Lja1g1402 360 Gene3D Protein tyrosine phosphatase superfamily 4 208 IPR029021 -
Lja1g1402 360 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 5 191 IPR029021 -
Lja1g1402 360 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 111 168 IPR000387 GO:0016311|GO:0016791
Lja1g1402 360 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 191 IPR020422 GO:0006470|GO:0008138
Lja1g1402 360 PIRSF DUSP12 4 48 IPR016278 GO:0006470|GO:0008138
Lja1g1402 360 PIRSF DUSP12 84 360 IPR016278 GO:0006470|GO:0008138
Lja1g1402 360 SMART dsp_5 1 188 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1402 Lja-Chr1 14916471 14920056 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1402 95 187 Protein tyrosine phosphatase (PTP) family AT3G06110 38.710 4.46e-18 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1402 K14819 - gmx:100804683 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1402 1 14916471 14920056 Lja1g1402 1 14916471 14920056 ECH