Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1377 ATGTCCCTTGAAGACTCTCTAAGATCTCTGTCCCTAGATTACCTCAACCTCCTCATCAACGGCCAAGCCTTCAGCGACGTCACCTTCAGCGTGGAAGGCCGCCTAGTCCACGCCCACCGATGCATCCTCGCTGCCAGGAGCCTCTTCTTCCGGAAATTCTTCTGCGGCCCCGACCCACCTCCTCCTTCCGGCAACCTCGACTCCCCCGGCGGACCTCGAGTCAACTCGCCGAGGCCCGGCGGAGTCATCCCGGTTAACTCCGTCGGCTACGAAGTCTTCCTCCTCATGCTCCAGTTCCTCTACAGTGGCCAAGTCTCCATCGTGCCACAGAAGCACGAGCCGAGACCCAATTGCGGTGAGCGTGCCTGCTGGCACACGCATTGCACCTCCGCCGTTGATCTCGCCCTTGACACTCTCGCCGCCGCGAGATACTTCGGCGTTGAACAGCTCGCATTGCTCACACAGAAACAACTAGCGAGCATGGTGGAGAAGGCTTCAATAGAGGATGTAATGAAAGTGCTGCTGGCTTCTAGAAAACAAGACATGCACCAGCTCTGGACCACATGTTCCCACCTCGTAGCTAAATCTGGTCTCCCTCCAGAGGTTCTCGCCAAGCATCTTCCCATTGACATTGTTGCCAAGATTGAAGAGCTCCGCCTCAAATCCACCCTTGCACGCCGCTCTCTGATCCCTCACCACCACCATCACCACCACCACCATGGCCACCATGACATGGGAGCAGCGGCAGACCTGGAGGATCAGAAAATCCGCCGGATGAGGCGGGCGCTTGACTCCTCGGATGTGGAGCTTGTGAAGCTCATGGTGATGGGAGAAGGCCTTAACCTTGATGAGGCGCTGGCCTTACCATACGCTGTCGAGAATTGCAGCAGGGAAGTGGTTAAAGCCCTGCTGGAGCTCGGGGCGGCGGATGTCAACTACCCATCGGGACCGTCTGGGAAGACGCCGCTCCACATCGCGGCTGAGATGGTCTCCCCGGACATGGTGGCGGTGCTGCTGGACCACCACGCCGACCCGAATGTCCGGACCGTGGACGGCGTCACGCCTCTGGACATCCTCAGAACCCTAACCTCAGATTTCCTCTTCAAAGGTGCTGTCCCAGGATTAACCCACATTGAACCAAACAAGCTTAGGCTGTGTTTGGAGCTTGTTCAATCAGCAGCTCTTGTTATGTCAAGGGAAGAAGGTAATGCCAATGCAAACAGCAGCAACAACAACAATGCTCCTTGTTCAGCAGCTACTCCGATATACCCTCCTATGAATGAGGATCACAATAGTAGTAGCAGCAATGCTAACCTTAACTTGGATTCCAGGTTGGTGTATCTCAACCTCGGCGCGGCCCAAATGAGCGGTGATGATGATAGCAGCCACGGCAGCCACCGGGAAGCCATGAACCAAGCCATGTACCACCACCACCACTCACATGACTATTAG 1452 0.562 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPPPSGNLDSPGGPRVNSPRPGGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERACWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSTLARRSLIPHHHHHHHHHGHHDMGAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPSGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNANANSSNNNNAPCSAATPIYPPMNEDHNSSSSNANLNLDSRLVYLNLGAAQMSGDDDSSHGSHREAMNQAMYHHHHSHDY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1377 483 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 479 IPR044284 GO:0099402
Lja1g1377 483 SUPERFAMILY Ankyrin repeat 277 361 IPR036770 -
Lja1g1377 483 PANTHER REGULATORY PROTEIN NPR5 1 479 - -
Lja1g1377 483 ProSiteProfiles Ankyrin repeat region circular profile. 318 348 - -
Lja1g1377 483 Pfam Domain of unknown function (DUF3420) 197 260 IPR024228 -
Lja1g1377 483 SUPERFAMILY POZ domain 8 160 IPR011333 -
Lja1g1377 483 Pfam Ankyrin repeats (3 copies) 266 348 IPR002110 GO:0005515
Lja1g1377 483 Gene3D Potassium Channel Kv1.1; Chain A 4 195 IPR011333 -
Lja1g1377 483 MobiDBLite consensus disorder prediction 401 437 - -
Lja1g1377 483 Gene3D - 250 366 IPR036770 -
Lja1g1377 483 ProSiteProfiles BTB domain profile. 25 109 IPR000210 GO:0005515
Lja1g1377 483 CDD BTB_POZ_NPR_plant 8 162 - -
Lja1g1377 483 ProSiteProfiles Ankyrin repeat profile. 318 350 IPR002110 GO:0005515
Lja1g1377 483 SMART ANK_2a 318 347 IPR002110 GO:0005515
Lja1g1377 483 SMART ANK_2a 283 313 IPR002110 GO:0005515
Lja1g1377 483 SMART BTB_4 25 162 IPR000210 GO:0005515
Lja1g1377 483 MobiDBLite consensus disorder prediction 401 418 - -
Lja1g1377 483 Pfam BTB/POZ domain 16 112 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1377 Lja-Chr1 14629103 14632760 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lja1g1377 BTB 5.1e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1377 K14508 - gmx:100816086 762.681