Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1372 ATGCTCGCCGGAGTAATTTCCCGTCGAGGGCCGCCGCCTGTTTTTATTCTCTCTGCTGTTCTGTTTTTCCTCTGCCTCTTTACTTCCTCTCACTCTGATGAACTTCAATCACTCATGAAGTTCAAGTCCTCTATCCAAACTTCAGATACAAACGTTTTCAGTTCTTGGAAACTTGCAAACTCTCCCTGCAACTTCACCGGAATTGTCTGCAATTCCAATGGTTTCGTTTCACAAATCAATCTCTCACAAAAAAAGCTAGTAGGCACTCTTCCTTTTGACTCAATCTGCGAGCTTCAATCGCTTGAGAAGTTCTCTATAGAGTCCAACTTCCTCCATGGCAGCATCAGTGAGGAGCTAAAGAACTGCACAAGCTTGAAGTACTTGGATTTGGGTGGCAATTCATTTACTGGTTCTGTACCTGAATTCTCAACTTTGAACAAGTTGGAGTACTTGAATTTAAATGCAAGTGGAGTTTCTGGTGTATTTCCATGGAAATCATTGGAAAATTTGACAAGTCTCACTTTTTTGAGCCTTGGTGATAACCTGTTTGAAGAAACTTCTTTCCCTTTGGAGGTCTTAAAGCTTGAAAATTTATACTGGCTTTACCTCACAAATTGCAGCATCACTGGGAAAATCCCAGTGGGTATTGGAAACCTAACTCATCTTCATAATCTTGAGCTTTCTGATAACAAGTTATCTGGTGAAATTCCAGCTGATATTGGTAAGCTTGTGAGGTTATGGAGGCTTGAGATATATGATAACTATTTGAGTGGGAAATTCCCAGTTGGATTTGGCAACCTTACCAATCTTGTCTACTTTGATGCTTCTAGTAACCATCTTGAAGGTGATCTTTCTGAGGTGAAGTTTTTGAAAAACCTTGCTTCTCTGCAGCTTTTTGAGAACAAATTCTCAGGAGTGATTCCACAGGAGCTTGGTGATTTCAGAAACCTCACAGATCTTTCTCTCTACTCTAACAACCTCACTGGTCCTCTTCCTCAAAAGCTTGGCTCCTGGGGAGGCATGGAATTCATTGATGTTTCAGACAATTCTCTTTCTGGTCCTATTCCACCTGATATGTGCAAGAACAGCAACATGTTCACAGACATGGCACTGTTAAACAACAGCTTCTCTGGAAGCATACCAGAAACATATGCAAATTGCACATCTTTGGTTAGGTTCAGGCTAAGTAGGAATTTACTTTCTGGTGTTGTTCCTTCAGGGATATGGGGTTTGCCAAATATGATACTAATTGATCTTGGGATGAACCGTTTTGAAGGTCCACTCTCATCTGATATTGGCAAAGCAAAATCTCTTGCTCAACTGTTTTTATCTGATAATAAGTTCTCAGGTGAGTTACCTTTGGAAATCTCAGAAGCCACTTCATTGGTCTCAATTCAGCTAAGTTCAAATCAAATTTCTGGTCATATCCCAGAAAAGATTGGTGAATTGAACAAGCTAACTAGTCTTAATTTGGATAATAACAATCTTTCTGGTATCATACCAGATTCTATTGGTTCCTGTGTTTCTCTGAATGAAGTAAATCTTGCTGGTAACTCTTTCACTGGGGTGATACCTACTACAATTGGGTCTCTTCCTACTCTTAATTCATTGAACCTGTCATCAAACAAGCTTTCTGGTAAAATCCCATCAAGTTTTTCATCTCGGAAACTTAGCCTCCTTGATTTATCTAACAACCAGTTGTTTGGTTCCATACCAGAATCAGTGGCTATTTCAGCTTTCAGAGAGGGGTTCATGGGAAATCCTGGCTTATGCAGCCAGACTTTGAGAAATTTCAAACCATGTTCATTGGAATCTGGCAGCTCCAGGAGAATCAGAAACCTTGTACTCTTTTTCATTGCTGGCTTAATGGTTCTCCTTGTTTCATTAGCATATTTTCTCTTCATGAAACTGAAGCAGAACAACAAGTTTGAGAAGCCAGTACTCAAGTCCAGTTCTTGGAATTTCAAGCACTACCGCGTGATAAACTTCAATGAGTCTGAAATCATTGATGGGATCAAGGCTGAGAATATGATAGGAAAAGGAGGATCTGGGAATGTTTACAAGGTTGTGCTTAAAACTGGGGAAGAACTTGCAGTGAAACACATATGGTCTTCAAATCCAAGTGTTCAGGGGAGTTGCAGGAGCAGCTCAGCTATGCTGAGAAGGGGTTCTTCAAGGTCACCTGAGTATGATGCTGAGGTGGCTACTCTGAGCTCTATAAGGCATGTGAATGTGGTGAAGCTCTATTGTAGCATCACAAGTGAAGATAGTAGCTTGCTTGTGTATGAGTTCTTGCCAAATGGGAGCTTGTGGGAGAGGTTGCACTGTTGTACGAAGACTCAGATGGGGTGGGAGGTTAGGTATGACATTGCAATTGGTGCTGCTAGAGGATTGGAATACCTGCATCATGGGTGTGATAGGCCTGTTATACACAGGGATGTGAAATCCAGTAACATATTGTTGGATGAGAAATGGAAGCCAAGGATTGCTGATTTTGGACTTGCCAAGATTCTGCAGGGAGGAGCAGGCAATTGGACCAATGTCATTGCTGGAACACTTGGCTACATGGCTCCTGAGTATGCGTATACTTGCAAAGTGACAGAGAAGAGTGATGTTTACAGTTTTGGGGTGGTGCTGATGGAATTGGTCACAGGGAAGAGGCCTATGGAGACAGAGTTTGGAGAGAACAAGGACATAGTCTACTGGGTATGCAGCAATATTAGGGACAAAGAAAATGCAGTTCAGTTAGTGGATCCTACCATTGCAAAGCATTTCAAAGAAGATGCAATGAAGGTGTTGAGAATCGCCACATTGTGCACGGCCAAATTTCCAGCTTCAAGGCCTTCAATGAGAATGTTGGTTCAAATGTTGGAAGAGATTGAGCCTTGTGCTTCAAGTTCAACCAAAGTGATTGTGACCATAGATGGCTAA 2931 0.4156 MLAGVISRRGPPPVFILSAVLFFLCLFTSSHSDELQSLMKFKSSIQTSDTNVFSSWKLANSPCNFTGIVCNSNGFVSQINLSQKKLVGTLPFDSICELQSLEKFSIESNFLHGSISEELKNCTSLKYLDLGGNSFTGSVPEFSTLNKLEYLNLNASGVSGVFPWKSLENLTSLTFLSLGDNLFEETSFPLEVLKLENLYWLYLTNCSITGKIPVGIGNLTHLHNLELSDNKLSGEIPADIGKLVRLWRLEIYDNYLSGKFPVGFGNLTNLVYFDASSNHLEGDLSEVKFLKNLASLQLFENKFSGVIPQELGDFRNLTDLSLYSNNLTGPLPQKLGSWGGMEFIDVSDNSLSGPIPPDMCKNSNMFTDMALLNNSFSGSIPETYANCTSLVRFRLSRNLLSGVVPSGIWGLPNMILIDLGMNRFEGPLSSDIGKAKSLAQLFLSDNKFSGELPLEISEATSLVSIQLSSNQISGHIPEKIGELNKLTSLNLDNNNLSGIIPDSIGSCVSLNEVNLAGNSFTGVIPTTIGSLPTLNSLNLSSNKLSGKIPSSFSSRKLSLLDLSNNQLFGSIPESVAISAFREGFMGNPGLCSQTLRNFKPCSLESGSSRRIRNLVLFFIAGLMVLLVSLAYFLFMKLKQNNKFEKPVLKSSSWNFKHYRVINFNESEIIDGIKAENMIGKGGSGNVYKVVLKTGEELAVKHIWSSNPSVQGSCRSSSAMLRRGSSRSPEYDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWERLHCCTKTQMGWEVRYDIAIGAARGLEYLHHGCDRPVIHRDVKSSNILLDEKWKPRIADFGLAKILQGGAGNWTNVIAGTLGYMAPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPMETEFGENKDIVYWVCSNIRDKENAVQLVDPTIAKHFKEDAMKVLRIATLCTAKFPASRPSMRMLVQMLEEIEPCASSSTKVIVTIDG* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1372 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Lja1g1372 976 ProSiteProfiles Protein kinase domain profile. 672 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1372 976 SMART serkin_6 672 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1372 976 Gene3D Transferase(Phosphotransferase) domain 1 765 972 - -
Lja1g1372 976 CDD STKc_IRAK 678 960 - -
Lja1g1372 976 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Lja1g1372 976 SUPERFAMILY L domain-like 55 364 - -
Lja1g1372 976 SUPERFAMILY RNI-like 290 574 - -
Lja1g1372 976 Gene3D Phosphorylase Kinase; domain 1 655 764 - -
Lja1g1372 976 Pfam Leucine rich repeat 509 567 IPR001611 GO:0005515
Lja1g1372 976 ProSitePatterns Protein kinases ATP-binding region signature. 678 700 IPR017441 GO:0005524
Lja1g1372 976 SUPERFAMILY Protein kinase-like (PK-like) 653 959 IPR011009 -
Lja1g1372 976 SMART LRR_typ_2 170 195 IPR003591 -
Lja1g1372 976 SMART LRR_typ_2 483 507 IPR003591 -
Lja1g1372 976 SMART LRR_typ_2 531 554 IPR003591 -
Lja1g1372 976 SMART LRR_typ_2 314 338 IPR003591 -
Lja1g1372 976 SMART LRR_typ_2 219 243 IPR003591 -
Lja1g1372 976 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Lja1g1372 976 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 15 968 - -
Lja1g1372 976 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 15 968 - -
Lja1g1372 976 Pfam Protein kinase domain 675 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1372 976 Gene3D Ribonuclease Inhibitor 341 602 IPR032675 -
Lja1g1372 976 Gene3D Ribonuclease Inhibitor 190 340 IPR032675 -
Lja1g1372 976 Pfam Leucine Rich Repeat 485 507 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1372 Lja-Chr1 14554292 14558559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1372 19 963 Receptor kinase-like Gene Family AT1G09970 58.780 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g1372 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1372 - - ccaj:109814095 1482.23