Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1360 ATGGGGATGGCTGCTGCAGAGTCACAGTACCATGTTCTGGCTGTTGATGACAGCATCATAGATAGAAAGCTCATTGAGAGGCTTCTTAAAACCTCTTCCTATCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTGGAGTTTCTGGGTTTGCATGAAAATGAAGAAAGTAACCCAAATACACCATCTATTTCACCTAACAACCATCAGGAAGTGGAGGTGAATCTTGTTATAACAGACTACTGTATGCCTGGAATGACAGGCTATGATTTGCTTAAAAAAATCAAGGAATCTTCATCTTTGAGAAACATACCAGTGGTGATTATGTCATCTGAGAATGTGCCTTCAAGGATTAACAGATGCTTGGAGGAAGGAGCAGAGGAATTTTTCTTGAAGCCTGTGAGGCAATCAGATTTGGTTAGACTCAAATCCCACATCAAGAAGACCAATTTGAAAAAAATTCAAAATCAAGATGTAGCAGATAAGCTTGAAATTCCAGAAGTTCAACAGCATCATCATCATCTTCCACAGCAAATCCAAAATGATCAGCAACAAGCACCAAAGTTCCAATATCTGCAGCCAGAGTCAGAGGTAGATCAACAGCAACAAGCACTACAACAAGCCAACAATAACAAGAGGAAGACCATGGAACAAGCCAACAGTACACCTGAGACTGACAGAACAAGACCAAGATACAGTGGCATAGCTACTGTGGTATGA 720 0.4069 MGMAAAESQYHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLHENEESNPNTPSISPNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRQSDLVRLKSHIKKTNLKKIQNQDVADKLEIPEVQQHHHHLPQQIQNDQQQAPKFQYLQPESEVDQQQQALQQANNNKRKTMEQANSTPETDRTRPRYSGIATVV* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1360 239 MobiDBLite consensus disorder prediction 194 228 - -
Lja1g1360 239 ProSiteProfiles Response regulatory domain profile. 11 147 IPR001789 GO:0000160
Lja1g1360 239 SUPERFAMILY CheY-like 9 148 IPR011006 -
Lja1g1360 239 Pfam Response regulator receiver domain 12 140 IPR001789 GO:0000160
Lja1g1360 239 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 2 235 - -
Lja1g1360 239 Gene3D - 9 231 - -
Lja1g1360 239 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 235 IPR045279 GO:0009736
Lja1g1360 239 MobiDBLite consensus disorder prediction 194 239 - -
Lja1g1360 239 CDD REC_typeA_ARR 12 142 - -
Lja1g1360 239 Coils Coil 198 222 - -
Lja1g1360 239 SMART REC_2 10 143 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1360 Lja-Chr1 14421659 14423914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1360 1 239 Response Regulator Gene Family AT3G57040 60.246 4.87e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g1360 Response_reg 2.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1360 K14492 - gmx:100788079 329.717