Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1355 ATGCTTGCATCCACTTCAACGTTCTCAAACTCAAACATGGGATGGCTCTCAGCAGAGGATCCCTTTAGCAATAACCAGAACTACTTGAATAAAGATCATACTGCATCAGATACCACAGGTCCACAGCCACCACATGTTGAAGTTGAAAAATCTACTGCACCATCCCTTGATGACCCTACCATGGTCAAGAAAATTACCCACAATGCTAATGAACGTGATCGCCGCAAGAAGATCAATAGCATAATTTCTTCACTTCGTTCACTTCTTCCCGAGGCAGAACACCCGAGAAAAATGAGCTTTCCAGCCACAATTTCCCAAGTTGTGAAATACATACCTGAGTTACAACAGCAAGTGGAAGAACTGAGTGAGAGAAAAGAGGAGCTTCTATCTATAATTTCTCGGCAAGGAGTTGCAATGAAAAAAGAATCTCAAATGAAGATTTCCCTTAACAACTCTGATTTCATAGTTTCAAATAGTTGGCTCAATGATACTGAGGCTGCTATTCTTATTACCTCTTATGAGGCCCACAATTCTCCACTATCTGAGATCTTGCTGTGTTTAGAAAATAATGGGTATAACCTGCTGAATGCTTCTTCTACTGAAACCTTTGGAGGAAGGGTCTTTTACAACTTGCATTTCCAGGTGGGAAAAGCCCATAGATTAGATTCGGATATTGTAACTCAGAAGCTTTTGTCATTATATGAGAAGAAGAAGCAAAGGATTTTCTCCTCAAATATGTGCCTGCTGAAGATCAATCGATCTTCTCTGCTATGA 774 0.4031 MLASTSTFSNSNMGWLSAEDPFSNNQNYLNKDHTASDTTGPQPPHVEVEKSTAPSLDDPTMVKKITHNANERDRRKKINSIISSLRSLLPEAEHPRKMSFPATISQVVKYIPELQQQVEELSERKEELLSIISRQGVAMKKESQMKISLNNSDFIVSNSWLNDTEAAILITSYEAHNSPLSEILLCLENNGYNLLNASSTETFGGRVFYNLHFQVGKAHRLDSDIVTQKLLSLYEKKKQRIFSSNMCLLKINRSSLL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1355 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 129 IPR036638 GO:0046983
Lja1g1355 257 CDD bHLH_AtORG2_like 63 135 - -
Lja1g1355 257 Pfam Helix-loop-helix DNA-binding domain 63 115 IPR011598 GO:0046983
Lja1g1355 257 MobiDBLite consensus disorder prediction 24 41 - -
Lja1g1355 257 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 237 - -
Lja1g1355 257 SMART finulus 68 120 IPR011598 GO:0046983
Lja1g1355 257 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 237 IPR015660 GO:0003700|GO:0006357
Lja1g1355 257 Gene3D - 57 145 IPR036638 GO:0046983
Lja1g1355 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 114 IPR011598 GO:0046983
Lja1g1355 257 MobiDBLite consensus disorder prediction 24 59 - -
Lja1g1355 257 Coils Coil 111 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1355 Lja-Chr1 14338897 14340313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1355 57 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 40.659 6.81e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g1355 HLH 5.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1355 - - lja:Lj0g3v0202299.1 282.722