Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1354 ATGGGGTGGCTCTCAGAGGAGGAACCATTTAGCCATAACCACAACTACTTCATTAAAGATAGTGTGCCCTCATCAGAATACTCATTATTTCCACATCAATTCTCTTCACCACAATCACAACCGCCGCAACTGCAACCGCAACTACAACTACAACCTCCACAACCACAGGTTGAGCTTGAAAAGCCTACTGCAACATCCCCTGATGACCCTATCATAGTCAAGAAAATTAGCCACAATGCTAATGAACGTGATCGCCGCAAGAAGATCAATAGCATAATTTCTTCACTCCGTTCACTTCTTCCGGTGGAAGATCAAACGAAAAAAATGAGCATTCCAGCTACAATTTCCCAAGTCATAAAATACATACCTGAGTTACAAAAGCAAGTGAAAGGACTAACTAAGAAAAAGGAGAAGCTTCTATCGAAAACTACTCGCCAAAGAGATGCAGTAAACGAAGAATCTCAAAGGAAGAAGATTCCCCATCACAACCCTGATTTCGTAGTTTCAAATAGTTGGCTCAATGATACTGAGGCTGCTATTCATATTTCCTCTTATGAGGCTCACCACAAGACTCCACTGTCTGAGATCTTGCTGTGTCTAGAAAATAATGGGTATTTACTGCTAAATGCTTCTTCTACTAAAACCTTTGGAGGAAGGATCTTCTATAACTTGCATTTCCAGGTGGAAAAAACTCAGAGATTAGAGGCTGATATTCTAACTCAGAAGCTTTTGTCAATATATGAGAAGAAGCAAAGAATGTTCTAA 765 0.4013 MGWLSEEEPFSHNHNYFIKDSVPSSEYSLFPHQFSSPQSQPPQLQPQLQLQPPQPQVELEKPTATSPDDPIIVKKISHNANERDRRKKINSIISSLRSLLPVEDQTKKMSIPATISQVIKYIPELQKQVKGLTKKKEKLLSKTTRQRDAVNEESQRKKIPHHNPDFVVSNSWLNDTEAAIHISSYEAHHKTPLSEILLCLENNGYLLLNASSTKTFGGRIFYNLHFQVEKTQRLEADILTQKLLSIYEKKQRMF* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1354 254 MobiDBLite consensus disorder prediction 28 70 - -
Lja1g1354 254 MobiDBLite consensus disorder prediction 141 161 - -
Lja1g1354 254 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 249 - -
Lja1g1354 254 Gene3D - 71 157 IPR036638 GO:0046983
Lja1g1354 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 142 IPR036638 GO:0046983
Lja1g1354 254 Coils Coil 122 142 - -
Lja1g1354 254 MobiDBLite consensus disorder prediction 28 61 - -
Lja1g1354 254 CDD bHLH_AtORG2_like 74 148 - -
Lja1g1354 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 125 IPR011598 GO:0046983
Lja1g1354 254 SMART finulus 79 131 IPR011598 GO:0046983
Lja1g1354 254 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 249 IPR015660 GO:0003700|GO:0006357
Lja1g1354 254 Pfam Helix-loop-helix DNA-binding domain 74 126 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1354 Lja-Chr1 14295627 14315900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1354 68 254 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.158 3.24e-48 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g1354 HLH 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1354 - - lja:Lj0g3v0202299.1 319.701