Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1353 ATGCTTCCATTCCTCCCTACTCCTGTGTTCTCATACTCAAACATGGAAAGTCTCTTAGATGAGGATCCCTTCAGCCATAACCAGAGCTACTTCAATAAAGAAAGTGTGTCCTCATCAGAGTACTCATTTCCTCATCAATTTTCTTCACCACAGCCACAGGTTGAAGTTGAAAAATCTACTTCACCATCCCCAGACACTACCATGGTCAAGAAGCTTAGCCACAATGCTAGCGAACGTGACCGCCGCAAAAAGATCAATACCTTGATTGCCTCACTTCGTTCACTTCTTCCCGGACAAGATCAAACGAAGAAAATGAGCATTCCAGCTACAATTTCCCAAGTCATAAAATACATACCTGAGTTACAAAAGCAAGTGAAAGGACAAACGAAGAAAAAGGAGAAGCTTCTACCGAAAATTATTAGTCAAGGAGATGCAGTAAACGAAGAATCTCCAGGGAAGAAGATTCCCCATCACAACTCTGATTTCATAGTTTCAAATAGTTGGCTCAATGATAGTGAGGCTGCTATTCATATTTCCTCTTATGAGGCCCACCACAAGACTCCACTAACTGAGATCTTGCTGTGTTTGGAAAATAATGGGTATTTTCTGCTAAATGCTTCTTCCACTGAAACCTTTGGAGGAAGGATCTTCTATAACTTGCATTTCCAGGCATTAATCGAATATTCGATTAATGGTGCCATCTTGAACTTTGTCTCCAATAAGATGACAATCAATCTCTAA 741 0.4049 MLPFLPTPVFSYSNMESLLDEDPFSHNQSYFNKESVSSSEYSFPHQFSSPQPQVEVEKSTSPSPDTTMVKKLSHNASERDRRKKINTLIASLRSLLPGQDQTKKMSIPATISQVIKYIPELQKQVKGQTKKKEKLLPKIISQGDAVNEESPGKKIPHHNSDFIVSNSWLNDSEAAIHISSYEAHHKTPLTEILLCLENNGYFLLNASSTETFGGRIFYNLHFQALIEYSINGAILNFVSNKMTINL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1353 246 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 224 IPR015660 GO:0003700|GO:0006357
Lja1g1353 246 SMART finulus 75 127 IPR011598 GO:0046983
Lja1g1353 246 CDD bHLH_AtORG2_like 70 136 - -
Lja1g1353 246 MobiDBLite consensus disorder prediction 35 81 - -
Lja1g1353 246 Gene3D - 63 148 IPR036638 GO:0046983
Lja1g1353 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 140 IPR036638 GO:0046983
Lja1g1353 246 MobiDBLite consensus disorder prediction 35 71 - -
Lja1g1353 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Lja1g1353 246 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Lja1g1353 246 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 7 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1353 Lja-Chr1 14288058 14290130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1353 67 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 45.562 4.69e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g1353 HLH 2.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1353 - - lja:Lj0g3v0202379.1 288.5