Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1337 ATGGCGCCAAAACGAAAACCTTCGTCTCCAATCTCCATAGGCAACTGCGAGGTCACCGTCGATGCCAGCCGCTTCACCTGCAACTCCGATTCAAACGGTCTCTCAATCTCTCTCCCCCGAAGCGGAAAGATCAAAGTATCAGATGCTGCCGAGAACCAGAGAAATGATTCTGAGGGTTTCAGGTCCGAAGGTAAAGAACACGAGTTCGTGCTCATTAATCCTAAAGATGGTGATGGTATAGGCAAATCCTACCTTCAGGAAGTATTGCAGATGTACATGACAGAGCTACCTGGAATGAATTATGCTGCGAATACCGGAAAGCAATCGAAGTTTCTTGAGAGATGTGTGACTAATGGGAAATATCGGACCCTACTTCTGAAGTTCAGTTCTGTTGGAAATTCAGGAAAGGTTATAGCTGCAATTACATTTCAAATCATCCCTGCAGATACAGAATATGCAGAGATCCCGCTTGCAGCTGTTAGTGCAATCTATCAACGGAAGGGTTTTGGTCACCTATTGTTTCTAGAGCTATTGAAGAGACTTCAAGATGTTGGCATTCGCACTATTTTCTGTTGGGGAGACAAAGAATCTGAAGGATTTTGGCTAAAACAGGGTTTTCTATCAATAGCACAGGTGGATGCTAAAGGAAGAGCTCGGAGATTACCTGTAAAAGCTGATATTCGCAAATCATTATGCTTTCCTGGTGGTTCGACTCTCATGGTTTGCCACCTAAGGAAGGATCTCTTAGCTGCTGATACTAACCCTGTGAAGTGTCTCCCCTCACAGCTTAATCAGAATTCCTTTACACCTGCAACTGTTGAGAATGAACGGATTGAATTTTCAAGGGAATTACTCACTGATTTGAAATTTTCAAAACGGTCTTCCCGTAAAATACAAACTGATCAAAATCAAGATGAAGCTTTAGTGAAAGATGGATCTTCAAGAGAATATGGTAAACTCAGTGGTTTTGACAGTTGCAACCGTCAGAACTGCTGCAGCAGTGACATTGTTCCTTTTTCCAGGGAAAAGGATGATAGGCAAACCACTTGTGCAGATTGTTCACAGGATGGACTTGATGCTGGTTTAAAATATTGTTCTCAGTCTACAAAAGGTGCTAAGAGGGCCTGGGAAGCCTCTTCATCCTCGTTGAAGTCAAAAAGAGTGAAGGGAAGCCAGCTGGTTGACTTCCAACCAGATTCTGCCTGGGGTTTTGTCTCAGAGGCTGATGGGGCTACTCCTTGCTTTGTGGAAGACTCTCATCTTGATTCTATGATTTCAAAAAATTCTGAAAAGTATACTGGGGATGATATGCATTTAGAAGCTCCCAAAGACATAGAACCGCCACCAACGAAACAATGCTTTAGAATCATGTTGATGAATATCGCTGACGATGCTAAGAAAACACAGCTTACAAAGGTGATTGAAGGCCTTGGTGGAACTATTTCCTATGATGGAAGCATAACCACACATGTTGTCACAGGAGCCGTGAGAAAAACTCTGAATTTCTGTACAGCCCTCTGTTCAGGTGCTTGGGTGGTCTCTTCAAGTTGGTTGAAACAAAGTTTTCGTGAAGGCAGATTTGTTGATGAATTGCCTCACATACTGAATGATAAGGATTATCGGCTGAAGTACAAATTTGATTTAGAAAGTGCTGTTTTCCGAGCAAAAGCTAGGCCCCATGCTTTGTTTAAGGGGTATTATATATGTATTACAGCTCATATTCAATCTGCTACTAAAACACTGTCTGCTATTGTCAGATCTGCTGGTGGTAATGTTATTAACGGGCTTGAAAAAGTGAATGATGCATCAACAACAATCTTTGTGGCATGCGAAGAAGATATAGAAGAAGCAATGATGGCTGCAAAGAAAGGTATACGTACTTTCAGTAGTGAATGGTTTATGAACTGTGTCATGAGACAAGAGCTTGACTTGGAGGCCCCTCAATTTGCAGAGTCCTTATAA 1962 0.422 MAPKRKPSSPISIGNCEVTVDASRFTCNSDSNGLSISLPRSGKIKVSDAAENQRNDSEGFRSEGKEHEFVLINPKDGDGIGKSYLQEVLQMYMTELPGMNYAANTGKQSKFLERCVTNGKYRTLLLKFSSVGNSGKVIAAITFQIIPADTEYAEIPLAAVSAIYQRKGFGHLLFLELLKRLQDVGIRTIFCWGDKESEGFWLKQGFLSIAQVDAKGRARRLPVKADIRKSLCFPGGSTLMVCHLRKDLLAADTNPVKCLPSQLNQNSFTPATVENERIEFSRELLTDLKFSKRSSRKIQTDQNQDEALVKDGSSREYGKLSGFDSCNRQNCCSSDIVPFSREKDDRQTTCADCSQDGLDAGLKYCSQSTKGAKRAWEASSSSLKSKRVKGSQLVDFQPDSAWGFVSEADGATPCFVEDSHLDSMISKNSEKYTGDDMHLEAPKDIEPPPTKQCFRIMLMNIADDAKKTQLTKVIEGLGGTISYDGSITTHVVTGAVRKTLNFCTALCSGAWVVSSSWLKQSFREGRFVDELPHILNDKDYRLKYKFDLESAVFRAKARPHALFKGYYICITAHIQSATKTLSAIVRSAGGNVINGLEKVNDASTTIFVACEEDIEEAMMAAKKGIRTFSSEWFMNCVMRQELDLEAPQFAESL* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1337 653 CDD BRCT_PAXIP1_rpt6_like 562 643 - -
Lja1g1337 653 ProSiteProfiles BRCT domain profile. 558 642 IPR001357 -
Lja1g1337 653 PANTHER N-ACETYLTRANSFERASE 4 653 - -
Lja1g1337 653 Gene3D BRCT domain 444 559 IPR036420 -
Lja1g1337 653 Pfam Acetyltransferase (GNAT) family 133 206 IPR000182 GO:0016407
Lja1g1337 653 Pfam BRCA1 C Terminus (BRCT) domain 561 637 IPR001357 -
Lja1g1337 653 Pfam BRCA1 C Terminus (BRCT) domain 462 522 IPR001357 -
Lja1g1337 653 SMART BRCT_7 448 525 IPR001357 -
Lja1g1337 653 SMART BRCT_7 560 640 IPR001357 -
Lja1g1337 653 Gene3D BRCT domain 560 652 IPR036420 -
Lja1g1337 653 Gene3D - 68 221 - -
Lja1g1337 653 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 98 210 IPR016181 -
Lja1g1337 653 SUPERFAMILY BRCT domain 497 643 IPR036420 -
Lja1g1337 653 SUPERFAMILY BRCT domain 435 548 IPR036420 -
Lja1g1337 653 ProSiteProfiles BRCT domain profile. 456 535 IPR001357 -
Lja1g1337 653 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 4 653 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lja1g1337 BRCT 0.00015 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1337 - - gmx:100806087 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1337 1 14098677 14105481 Lja1g1337 1 14098677 14105481 ECH