Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1327 ATGGATCACACAACAAATCCCAACAACGATTCCCTTTCCTACTCCACTCTCTTCAATCTCGAGCCTTTGATGAACTTTCAACTTCCAGAACAAGATGATGATTTTGAGTATTATGGGAATAGTAGTCAGGATGAGAGCAGAAACAACAGCCAAGTAGGTGGGGCAATTGTGAATGATAGCAATGGGAGCATGCACGGAAGGGATGTGAAGAGGTCTCGAAACAGTGATAGCAAGGAGAAGAGTAGTTTTAACGGCACACACATGACGGAGGAACGATATCGATCAATGCTTGGAGAGCATATTAAGAAATATAAGAGGAGGTCTAAGGATACCTCGTCTAGTCCGGCCCAAAATCAGGTTGCTGTTCCAGTTGCGAAAAGTAACACAGGATTAAAATCTCACAAGTTAGGGAATGAACGCAGGGGAGGATTACAGGCTCCAGAGACTACATCGGAATGGATGAATGGATCCGATTCTCAGAAACTAGGGAACTTCCGTGAGGCAAATTTAGTGCAGCGATTTGGCACTGATAGGATTATGTATGAACCTCCATCTTTGGACATTGGGGATGGTATAACCTACAAAATTCCTCCAATTTATGATAAGTTGGCTGCAATGCTGAACCTTCCAAGCTTCTCGGATATCCATGTCGAGGACTTTTACTTAAAGGGTACCTTGGATTTGGGCTCCTTGGCTGAAATGATGGCTGTTGATAAAAGGTTTTGGAATAGAAATCGGGCAGGCATGGGGGAACCCATAACCCAATATGAATCACTTCAGGCACGACTAAGGGTCATGTCAACTTCTAATTCAGCTCATAATTTCAGCCTCAGAGTATCTGATGATGGTAGTTCTTCCATTCCGGAGGGGGCGCCTGGAAACATAAAGCGACATATTTTATCTGAGGGTGGTGTACTGCAGGTTTATTATGTGAAGGTTTTGGAGAAAGGCGACACATATGAGATCATTGAACGAAGCCTACCTAAGAAACAAAAGTTTAAGAAAGACCCTGCTTTAATAGAAAAGGAGGAAATGGAAAGATTTGGAAAGGTTTGGGTAAATATTGTAAGGAGAGACTTGCCAAGGCATCATAGGAACTTCACTACTTTTCATCGAAAGCAGCTCACTGATGCCAAAAAGTTCTCGGATACCTGTCAAAGAGAGGTTAGAATGAAAGTGAGTAGATCACTTAAATGGACAAGGACTGCCAGTATGCGCACCCGGAAATTAGCTAGAGACATGTTACTATTCTGGAAACGAATAGAAAAGGAGACGGCAGAAGTGAGAAAAAGAGAAGAAAAAGAAGCTGCTGAAGCTTTGAGGCGCGAACAGGAGCTCCGAGAAGCAAAGAGGCAGCAGCAAAGGCTTAATTTTCTTATACAACAAACAGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACTATCTTCAGAAGCTTTGCCCACGGAAGATGAAAATACAAATGACCAAGGTGCACTGATAAACTCTTCAGATGCTGGGCCTAATGAGGAGGAAGATCCTGAAGAGGCTGAATTGAAGAGGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAGCAGAGAAGTTTGACAAGCGCTTTTGACACTGAATGCTTGAGGCTGCGCCATGCTGGTGAAACTGATTCAGTACCGCCAGAAGTTGCTGGAGCAAGTAATATTGATTTGCAAACCCCCTCCACCATGCCTGTGGCATCCACTGTTCGGACACCTGAATTATTTAATGGTTGTCTAAAAGAATATCAACTAAAAGGTCTTCAGTGGCTAGTTAATTGTTACGAGCAGGGTTTGAACGGTATTCTTGCTGATGAGATGGGACTTGGAAAGACCATTCAAGCTATGGCTTTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGACCTTTTTTGGTTGTTGCACCTGCCTCAGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTGAAAAGACTTCCTTATTGGGGTGGGGTTTCAGAGCGAACAGTGCTCAGGAAAAGTATCAACCCAAAGGATCTTTATCGGAGGGAGGCTAAATTTCACATTCTTATTACAAGCTACCAACTTTTAGTAACTGATGAGAAGTTCTTTCGGCGCGTGAAATGGCAGTATATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTGCAAGCAGTATAAGATGGAAGACACTCCTCAGCTTTAATTGTCGGAATCGCCTACTGCTAACTGGTACACCCATTCAGAATAATATGGCTGAGTTATGGGCTCTTCTGCACTTCATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAAAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAATCGGTTGCATTCAATTATAAAGCCTTTCATGCTGCGACGTGTTAAAAAAGATGTGGTTTCTGAGCTGACTACAAAAACTGAAGTTACGGTCCATTGCAAGTTGAGTTCTCGTCAGCAGGCTTTTTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGACAGTAATCGTGGGCAGCTTAATGAAAAGAAAATCCTGAATTTAATGAATATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCGGAGTTGTTCGAAAGGAGTGAGGGCAGCACATACCTTTACTTTGGAGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGTTGGAGGATGTATATTATTCTGGTGGTCACAACCCCATATCCTATGAGATACCAAAAGTTGTCTATCAAGAAATATTGCGAAGTTCTGAAACTCTCAGCTCAGCTGTTGCTCATGGTGTCTGTAGAGAGCCTTTACAGAAGCATTTTAATATTTTTACACCAGCAAATATTTATCGATCTGTGTTCTCAGAAGATATTCATGTTAAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCACAAGAGGTGACATTTCTGGCTACTGGTTCTTTTATGGAGCGTCTTTTATTTTCTATGACGAGATGTGAAGAAAAGTTCATTAATGAAGTGGTAGACTTTGTTATGGAGACCTTAGATGATGATGATCCAGGATGTAGTTACCTTGATAAAGGAAAAGTGAGAACTGTCACACGAATGTTATTGGTGCCGCTAAGATGTGAGACTAAGTTTCTTCAAAACAGTTTGCCAACGGGTACTGGCCATGCTCCTTTTGAGGCCTTGGTTGTCCCACATCAGGATAGGCTTTCATCAAATGCAAGGCTTCTTCACTCTGCTTACTCATATATCCCAAAAAGTAGAGCTCCCCCAATTGGTGCTCACTGCTCTGATAGAAACTTCTACTATAAAATGATTGAAGAATTACATGATCCCTGGCTTAAGAGGATGTTTGTGGGATTTGCACGTACTTCTGATTGTAATGGGCCTAGAAAGCCAAATGGTCCTTCTCATCATTTGATTCAAGAGATAGATTCTGAAATCCCTGTTTCTCAGCCTGCTCTTCAGTTGACACACAGCATTTTTGGGTCTTCTCCACCTATGCGAAATTTTGACCCAGCAAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGAGCAGGAAATCATCGTGTTCTTCTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGGAAATATAAGTATTTTAGACTTGATGGATCATCTACCATTCAGGACCGCAGAGACATGGTCAGAGACTTTCAACATAGGTCTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCAGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTGGATTTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATTTGTAAGGAGACAGTTGAAGAGAAGATTCTTCAAAGAGCTAGTCAAAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGCGGTGACCTTTTAGCTCCTGAGGATGTCGTATCTTTGCTTCTGGATGATGTTCAGTTGGAGCAGAAATTAAAGGAAATCCCTCTCCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTACGAAGGGTATTCGGGTAAATGAAGATGGTGATGCGTCTTTTGAAGATCTATCAAACTCTGTGGCTCAGGGTACTGCAGATAACGATAATGCCATGAACCCAGAGGGATCAAAGTCCAGTAACAAAAAGAGAAAAGCTGCCTCGGATAAGCAAACTTCGAGGGCAAAAAATTCCCAAAAGATGAGTGAACTGAGTACTATGCCTATAGATGACCAATTGGATGATATCCACCTAAATACTGATCCAGTGGATCAGAAACCGAAGAGACCAAAGAGAATAAAGAAGAATGTCAATGAAAAGTTTGAAGAGGCTTTTACTGGCACAGCTACCGTGGTCCCAGAGCAGACCCAGTTTCAACCTCCACATGATTTCAATGCTGGCGGGTCTAAAGTTGAATCAGGCCAAGACACCTGA 4599 0.4186 MDHTTNPNNDSLSYSTLFNLEPLMNFQLPEQDDDFEYYGNSSQDESRNNSQVGGAIVNDSNGSMHGRDVKRSRNSDSKEKSSFNGTHMTEERYRSMLGEHIKKYKRRSKDTSSSPAQNQVAVPVAKSNTGLKSHKLGNERRGGLQAPETTSEWMNGSDSQKLGNFREANLVQRFGTDRIMYEPPSLDIGDGITYKIPPIYDKLAAMLNLPSFSDIHVEDFYLKGTLDLGSLAEMMAVDKRFWNRNRAGMGEPITQYESLQARLRVMSTSNSAHNFSLRVSDDGSSSIPEGAPGNIKRHILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKFKKDPALIEKEEMERFGKVWVNIVRRDLPRHHRNFTTFHRKQLTDAKKFSDTCQREVRMKVSRSLKWTRTASMRTRKLARDMLLFWKRIEKETAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSEALPTEDENTNDQGALINSSDAGPNEEEDPEEAELKREALKAAQEAVSKQRSLTSAFDTECLRLRHAGETDSVPPEVAGASNIDLQTPSTMPVASTVRTPELFNGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGVSERTVLRKSINPKDLYRREAKFHILITSYQLLVTDEKFFRRVKWQYMVLDEAQAIKSASSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSIIKPFMLRRVKKDVVSELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGELEDVYYSGGHNPISYEIPKVVYQEILRSSETLSSAVAHGVCREPLQKHFNIFTPANIYRSVFSEDIHVKSGNFGFTHLMDLSPQEVTFLATGSFMERLLFSMTRCEEKFINEVVDFVMETLDDDDPGCSYLDKGKVRTVTRMLLVPLRCETKFLQNSLPTGTGHAPFEALVVPHQDRLSSNARLLHSAYSYIPKSRAPPIGAHCSDRNFYYKMIEELHDPWLKRMFVGFARTSDCNGPRKPNGPSHHLIQEIDSEIPVSQPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILQRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKKKQPTKGIRVNEDGDASFEDLSNSVAQGTADNDNAMNPEGSKSSNKKRKAASDKQTSRAKNSQKMSELSTMPIDDQLDDIHLNTDPVDQKPKRPKRIKKNVNEKFEEAFTGTATVVPEQTQFQPPHDFNAGGSKVESGQDT* 1533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1327 1532 SMART helicmild6 1232 1315 IPR001650 -
Lja1g1327 1532 Gene3D - 582 823 IPR038718 -
Lja1g1327 1532 MobiDBLite consensus disorder prediction 1469 1483 - -
Lja1g1327 1532 MobiDBLite consensus disorder prediction 1408 1432 - -
Lja1g1327 1532 Gene3D - 1173 1427 IPR027417 -
Lja1g1327 1532 PANTHER HELICASE SRCAP-RELATED 18 1487 - -
Lja1g1327 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 816 1383 IPR027417 -
Lja1g1327 1532 CDD SF2_C_SNF 1194 1326 - -
Lja1g1327 1532 MobiDBLite consensus disorder prediction 482 521 - -
Lja1g1327 1532 MobiDBLite consensus disorder prediction 41 58 - -
Lja1g1327 1532 ProSiteProfiles DBINO domain profile. 351 476 IPR020838 GO:0003677
Lja1g1327 1532 Coils Coil 423 462 - -
Lja1g1327 1532 MobiDBLite consensus disorder prediction 1447 1461 - -
Lja1g1327 1532 MobiDBLite consensus disorder prediction 111 126 - -
Lja1g1327 1532 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 598 769 IPR014001 -
Lja1g1327 1532 Pfam DNA-binding domain 346 475 IPR020838 GO:0003677
Lja1g1327 1532 SMART ultradead3 582 777 IPR014001 -
Lja1g1327 1532 PANTHER CHROMATIN-REMODELING ATPASE INO80 18 1487 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Lja1g1327 1532 MobiDBLite consensus disorder prediction 1508 1532 - -
Lja1g1327 1532 MobiDBLite consensus disorder prediction 64 110 - -
Lja1g1327 1532 MobiDBLite consensus disorder prediction 1386 1491 - -
Lja1g1327 1532 MobiDBLite consensus disorder prediction 482 499 - -
Lja1g1327 1532 Pfam SNF2-related domain 601 888 IPR000330 GO:0005524|GO:0140658
Lja1g1327 1532 MobiDBLite consensus disorder prediction 33 159 - -
Lja1g1327 1532 Gene3D - 824 893 IPR027417 -
Lja1g1327 1532 MobiDBLite consensus disorder prediction 144 159 - -
Lja1g1327 1532 Pfam Helicase conserved C-terminal domain 1206 1315 IPR001650 -
Lja1g1327 1532 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1206 1390 IPR001650 -
Lja1g1327 1532 MobiDBLite consensus disorder prediction 1386 1407 - -
Lja1g1327 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 570 814 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1327 Lja-Chr1 13918379 13930066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1327 607 896 RAD5 or RAD16-like Gene Family AT5G43530 28.274 1.24e-25 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g1327 SNF2_N 1.5e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1327 K11665 - gmx:100780615 2550.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1327 1 13918379 13930066 Lja1g1327 1 13918379 13930066 ECH