Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1323 ATGGAGAGCCTCTTGAAGGACTTTGAGCTCGAGCACAAGAATCCATCTGTCGAAGCTCTCCGCCGATGGAGATCCGCCGTGAGCTTCGTCGTGAAGAATCGCCGTAGACGCTTCCGTATGTGCGCTGATCTTGATAAGCGGTCTGAAGCAGAGCAGATTAAGCAGGGAATCAAGGAAAAAATTCGGATTGCTCTATATGTTCAGAAGGCAGCATTGCAATTTATCGATGCTGGTAATCGAGTTGAATACGAGCTACCGGAAGAGGCAAGAGAAGCTGGTTTTGGCATTCATGCAGATGAGGTTGCTTCTCTTGTTCGTAGCCATGATTATAAGAACTTGAGTAATAATGGTGGGGTTGAAGCCCTTGCAAGGAAACTGTCAGTTTCTGTGGATGAAGGTGTCAGTGAAGCGAGTATAAACTCCAGACAACAGATATATGGGGCCAACCGTTATACAGAGAAACCTTCGAGATCGTTCCTGATGTTTGTGTGGGATGCACTTCAGGATTTAACTCTAATCATTCTTATGGTTTGTGCTGTAGTTTCTATAGGTGTAGGGATTGCCACTGAAGGGTGGCCAAAGGGAACGTATGATGGTGTGGGAATCATACTCAGTATATTGTTGGTAGTTGTTGTTACTGCTAGCAGTGATTACAAGCAATCTCTTCAGTTCATGGACTTGGACAAAGAGAAGAAAAAGATCTTTGTTCAGGTCACCAGGGATGGGAAAAGACAGAAGATCTCAATTTATGATATAGTAGTGGGTGATATTGTGCATTTGTCAACTGGAGATCAAGTTCCAGCTGATGGGATTTTTATATCAGGATACTCTTTGCTTATTGATGAATCGAGCTTGTCAGGTGAAAGCGAACCGGTATATGTATATGATGAAAAACCTTTTCTTCTCTCAGGCACCAAAGTGCAGGATGGTCAAGGGAAGATGTTAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTCTGAATGAGGGAGGAGAGGATGAGACCCCATTGCAGGTGAAATTGAATGGAGTTGCTACTCTTATTGGTAAAATTGGTTTGGTGTTTGCCGTTCTTACATTTTTGGTATTGACTGTAAGATTTCTGGTCGAGAAAGCGCTTCATGGTGAGATTTCTAGTTGGTCTTCGAATGATGCATTGAAGCTGCTGGACTACTTTGCTATCGCTGTAACCATAATAGTTGTTGCAGTTCCTGAAGGATTACCACTGGCTGTGACGCTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAAGGCGCTTGTGAGACATCTTGCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGGACATTGACCACTAACCATATGGTGGTTGATAAAATATGGATATGCGAAACCGCTATGCAGATGAAAGATAATGAGAGTGCTGACAAACTCAAAACAAATATATCTGAAGGAGTACTAAACACCCTTTTGCAGGCTATATGTCAAAATACTTCTTCTGAAGTAGTTAAGAATGAAAATGGAAAGCACATAATATTGGGAACCCCAACAGAATCAGCATTATTGGAATTTGGTTTGCTTTTGGGTGCTGATTTTGACGCCCAGCGTAGCGTGTCTAAGATAATCAAGATTGAGCCATTCAATTCAGTCTGGAAGAAGATGTCTGTGCTTGTGGGTCTTCCTGATGGAGGGGTCCAAGCTTTCTGCAAAGGTGCATCAGAAATAATTTTAAAAATGTGTGACAAAGTTATTGATTTCAATGGGGAAGTTGTTGATCTTCCGGAAGACTGCGCAAATCATGTCGCTGATGTTATAAATAGCTTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTGGCCGTCAAAGATATAAGTGAAACACAGGGGGATATAGACATTCCAGATAGTGGCTATACTCTAATCGCCATAGTAGGAATCAAAGATCCTGTACGCCCCGGGGTTAAGGAAGCTGTTCAAAGTTGTTTAGCTGCTGGTATAACTGTCCGCATGGTTACTGGTGATAATATTTATACAGCTAAAGCTATAGCTAGAGAGTGTGGTATACTTACTGAAGATGGTGTGGCCATAGAAGGACCCGATTTTCGTGACATGTCTCCGGAGCAAATGAAGGATGTCTTACCAAGAATCCAGGTGATGGCACGGTCCTTACCACTTGACAAGCATAAGTTAGTAACCAATTTGAGGAGTTTGTTTGGTGAGGTAGTCGCTGTTACTGGAGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGACTTGCCATGGGCATAGCTGGAACTGAGGTTGCAAAAGAAAAGGCTGATGTGATTATAATGGATGATAACTTTGCGACTATCGTCAATGTGGTCAAATGGGGACGTTCTGTGTATATAAACATCCAAAAGTTTGTGCAGTTTCAGTTAACAGTTAATGTTGTTGCTCTGGTTATCAACTTCTTCTCTGCATGCATCACTGGTTCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTTGGTGCATTAGCCTTGGCTACTGAACCTCCTAATGACGGACTCTTGAAAAGACCCCCAGTTGCAAGGGGAGCAAGCTTTATCACCAAAGCTATGTGGAGGAATATCATTGGTCAAAGTATATATCAATTAATTGTACTTGTCATTCTAACATTTGACGGGAAGAGGCTACTCAGACTTAGTGGTTCAGATGCAACTAGAGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGGTGTTTAATGAGATAAACAGCAGAGATATTGAAAAGATAAACATATTCAGGGGCATGTTTGACAGCTGGATATTCGTGGCTATAATTTCGGCGACTGTGGTGTTTCAAGTGGTGATAGTTGAGTTCCTGGGAGCGTTTGCCAGCACTGTGCCTCTAAGCTGGCAATTCTGGTTACTCAGTGTGTTGATTGGAGCAATTAGCATGCCTATAGCTGTTATCCTCAAGTGCATCCCAGTTGAAAGAAATACTAGCAGCAAGAAGAAGCACCATGATGGTTATGAGGCTCTTCCATCTGGTCCCGACCTGGCATAA 3111 0.4253 MESLLKDFELEHKNPSVEALRRWRSAVSFVVKNRRRRFRMCADLDKRSEAEQIKQGIKEKIRIALYVQKAALQFIDAGNRVEYELPEEAREAGFGIHADEVASLVRSHDYKNLSNNGGVEALARKLSVSVDEGVSEASINSRQQIYGANRYTEKPSRSFLMFVWDALQDLTLIILMVCAVVSIGVGIATEGWPKGTYDGVGIILSILLVVVVTASSDYKQSLQFMDLDKEKKKIFVQVTRDGKRQKISIYDIVVGDIVHLSTGDQVPADGIFISGYSLLIDESSLSGESEPVYVYDEKPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATLIGKIGLVFAVLTFLVLTVRFLVEKALHGEISSWSSNDALKLLDYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLAACETMGSASCICTDKTGTLTTNHMVVDKIWICETAMQMKDNESADKLKTNISEGVLNTLLQAICQNTSSEVVKNENGKHIILGTPTESALLEFGLLLGADFDAQRSVSKIIKIEPFNSVWKKMSVLVGLPDGGVQAFCKGASEIILKMCDKVIDFNGEVVDLPEDCANHVADVINSFASEALRTLCLAVKDISETQGDIDIPDSGYTLIAIVGIKDPVRPGVKEAVQSCLAAGITVRMVTGDNIYTAKAIARECGILTEDGVAIEGPDFRDMSPEQMKDVLPRIQVMARSLPLDKHKLVTNLRSLFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKEKADVIIMDDNFATIVNVVKWGRSVYINIQKFVQFQLTVNVVALVINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVARGASFITKAMWRNIIGQSIYQLIVLVILTFDGKRLLRLSGSDATRVLNTLIFNSFVFCQVFNEINSRDIEKINIFRGMFDSWIFVAIISATVVFQVVIVEFLGAFASTVPLSWQFWLLSVLIGAISMPIAVILKCIPVERNTSSKKKHHDGYEALPSGPDLA* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1323 1036 Gene3D - 15 77 - -
Lja1g1323 1036 Gene3D - 133 333 - -
Lja1g1323 1036 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1012 IPR023298 -
Lja1g1323 1036 SUPERFAMILY HAD-like 449 856 IPR036412 -
Lja1g1323 1036 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 104 1013 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lja1g1323 1036 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 660 IPR023299 GO:0000166
Lja1g1323 1036 CDD P-type_ATPase_Ca_PMCA-like 139 884 - -
Lja1g1323 1036 Pfam haloacid dehalogenase-like hydrolase 448 764 - -
Lja1g1323 1036 PRINTS H+-transporting ATPase (proton pump) signature 783 808 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g1323 1036 PRINTS H+-transporting ATPase (proton pump) signature 608 626 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g1323 1036 PRINTS H+-transporting ATPase (proton pump) signature 751 767 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g1323 1036 Gene3D - 460 655 IPR023299 GO:0000166
Lja1g1323 1036 SFLD p-type atpase 432 803 IPR044492 -
Lja1g1323 1036 Gene3D - 165 1010 - -
Lja1g1323 1036 Gene3D - 447 796 IPR023214 -
Lja1g1323 1036 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Lja1g1323 1036 PRINTS P-type cation-transporting ATPase superfamily signature 670 680 - -
Lja1g1323 1036 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Lja1g1323 1036 PRINTS P-type cation-transporting ATPase superfamily signature 648 659 - -
Lja1g1323 1036 PRINTS P-type cation-transporting ATPase superfamily signature 751 770 - -
Lja1g1323 1036 PRINTS P-type cation-transporting ATPase superfamily signature 775 787 - -
Lja1g1323 1036 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Lja1g1323 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 202 476 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g1323 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 543 696 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g1323 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 717 838 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lja1g1323 1036 Pfam Cation transporter/ATPase, N-terminus 116 182 IPR004014 -
Lja1g1323 1036 Pfam Cation transporting ATPase, C-terminus 836 1009 IPR006068 -
Lja1g1323 1036 SFLD Haloacid Dehalogenase 432 803 - -
Lja1g1323 1036 Pfam E1-E2 ATPase 235 428 - -
Lja1g1323 1036 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Lja1g1323 1036 PANTHER CATION TRANSPORTING ATPASE 45 1018 - -
Lja1g1323 1036 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Lja1g1323 1036 SMART Cation_ATPase_N_a_2 109 187 IPR004014 -
Lja1g1323 1036 PANTHER CALCIUM-TRANSPORTING ATPASE 45 1018 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1323 Lja-Chr1 13872079 13881439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1323 57 1033 Primary Pumps ATPases AT3G57330 74.616 0.0 1498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1323 K01537 - gmx:100783489 1714.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1323 1 13872079 13881439 Lja1g1323 1 13872079 13881439 ECH
Lja1g1323 1 13872079 13881439 Lja5g2203 5 36024302 36034468 PCT