Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1320 ATGGCCTTAAAAAACTTGTCATTTCTCACGCTCGGTGTTTCTATGATACTTTCCATCTTGTCATCATCATCATCATCATCCATAGGTGCTGCAACTCCGCCTATAGTTCCCCCAGAAACTGTTTGCAGATCCGCCGCAAACCCTTCCTTCTGCAAAACACTGCTTGCCAATCAAAATAGTACCGTCTTCGACTATGGCCGCTTTACGGTCACAAAGTCCTTGTCCCAGTCCCGCAAGTTCTTAAACCTTGTAGATTCACATCTTCAAGACACATCGTCTTTTTCTCAACCCACAATTCGCGCTCTTGAGGATTGCAGTTTCCTTGCTGAGCTGAATTTTGAATTTTTATCAAACGCCCTTAACACCGCTAGTTATAAAGCTAGCGACGTTCTTCCTTCTTCCCAAGCGGAAGAAATGCACACGTTGTTGAGTGCTGTTCTAACAAACCAACATACTTGTTTAGAAGGCCTAGAGACCACAACTTCTGATCAGAGATTGAAGGATGATTTATTGTCATCACTCTCTAATGATACAAAGCTTCACGCTGTTTCCCTTGCCCTCTTCGTGAAGGGTTGGGTGCCTCATAAGAAAACACAAACATCATGGCAACCCAATATCGGGAGGCACTTGGGTTTTCGCAACGGTCGTTTACCATTGAAGATGTCAAATCGAGCACGTGCGATTTATGATTCTGCTAGAGGCGGAGGTAGAAGGTTACTTCAAATGTTGGATGACAACACGAGCGTCACGGTGAGTGACATCGTGGTTGTTAGTCAGGATGGAAGCGGAAACTTCACTACTATCAATGCTGCTATAGCCGCTGCACCAAATAACACAGATAGTAGTGGTGGCTACTTTCTTGTATATGTCACTAAGGGCGTGTATCAAGAGTATGTGTCTATAGCCAAAAACAAAAAGTACTTGATGATGGTCGGAGATGGGATCAACCAAACAATTATCACCGGTAATCACAATGTTGTCGATAATTTTACAACATTCAACTCCGCAACATTTGTCGTGGTAGCACAAGGATTCGTAGGAGTTAATATAACATTCCGTAACACTGCTGGGCCAAGCAAGCACCAAGCAGTTGCAGTAAGAAACGGAGCTGACCTGTCCACCTTTTACAGTTGCAGCTTTGAAGGGTATCAAGACACTTTGTACACGCACTCTCTGAGGCAGTTTTATCGTGAATGTGACATCTATGGCACAATTGACTTCATATTCGGAGATGCAGTTGTTGTTTTCCAAAACTGCAATCTGTATCCTCGCCTACCCATGAGTGGCCAATCCAATCCCATCACTGCTCAAGGGCGAACTGATCCAAATCAAAACACAGGCATTTCTATCCATAACGCCACTATTAAAGCCGCTGGTGATTTGGCTCCGGTGGTTAGCACTGTGAAAACATACCTTGGGAGGCCATGGCAACAATACTCAAGGACTGTTTATCTGCATTCATTCATGGATAACTTGATAGATCCTGCTGGTTGGCATGAATGGAGCGGGGATTTTGCATTAAGTACCTTGTATTATGCAGAGTATAATAACACGGGACCTGGTTCAAACACTACGAACAGAGCGAATTGGCTTGGCTACCATGTCATTAATGCTTCTGATGCATCTAATTTTACTGTGTCTAACTTCTTGGGTGGGGATCATTGGCTGCCTCAGTCCGGTGTCCCCTACTTGAGTGGTTTGATATAG 1707 0.4417 MALKNLSFLTLGVSMILSILSSSSSSSIGAATPPIVPPETVCRSAANPSFCKTLLANQNSTVFDYGRFTVTKSLSQSRKFLNLVDSHLQDTSSFSQPTIRALEDCSFLAELNFEFLSNALNTASYKASDVLPSSQAEEMHTLLSAVLTNQHTCLEGLETTTSDQRLKDDLLSSLSNDTKLHAVSLALFVKGWVPHKKTQTSWQPNIGRHLGFRNGRLPLKMSNRARAIYDSARGGGRRLLQMLDDNTSVTVSDIVVVSQDGSGNFTTINAAIAAAPNNTDSSGGYFLVYVTKGVYQEYVSIAKNKKYLMMVGDGINQTIITGNHNVVDNFTTFNSATFVVVAQGFVGVNITFRNTAGPSKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFIFGDAVVVFQNCNLYPRLPMSGQSNPITAQGRTDPNQNTGISIHNATIKAAGDLAPVVSTVKTYLGRPWQQYSRTVYLHSFMDNLIDPAGWHEWSGDFALSTLYYAEYNNTGPGSNTTNRANWLGYHVINASDASNFTVSNFLGGDHWLPQSGVPYLSGLI* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1320 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 188 IPR035513 -
Lja1g1320 568 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Lja1g1320 568 SUPERFAMILY Pectin lyase-like 250 566 IPR011050 -
Lja1g1320 568 Pfam Pectinesterase 255 553 IPR000070 GO:0030599|GO:0042545
Lja1g1320 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 190 IPR035513 -
Lja1g1320 568 SMART PMEI_2 33 187 IPR006501 GO:0004857
Lja1g1320 568 CDD PMEI-like_3 40 188 - -
Lja1g1320 568 Gene3D - 252 568 IPR012334 -
Lja1g1320 568 PANTHER PECTINESTERASE 27 566 - -
Lja1g1320 568 Pfam Plant invertase/pectin methylesterase inhibitor 39 186 IPR006501 GO:0004857
Lja1g1320 568 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 27 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1320 Lja-Chr1 13833137 13835102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1320 17 568 Carbohydrate Esterase AT2G47550 59.750 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1320 K01051 - gmx:100813051 860.136