LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g1310	ATGGGTGGAGTGGGGGAGAGAGGTGCAGCAATGGATGCTATGGTGATGGCGTGGGAAGATTTAACAGTAGAGCTCCCAAACAAGAAGTTTCTGCTTCATGGGATTACTGGTTTTGCTCAACCTGGTAGGATCATGGCCGTCATGGGTCCTTCAGGTTGTGGCAAAACCACCCTACTCGACTCATTGGCAGGAAAACATTCTGCAAATGTTATAGTGACCGGCAACATTCACATCAACGGAAAGAATAGAAGCCTGTATTACAGACAAGTGTGTTACGTTGCTCAAGAGGAAATTTTCTTGGGAACATTGACTGTAAGAGAGAGCCTCACATACTCTGCATACATGAGGCTTCCTTCTGATATGACCAAAGAAGAGACAAACAAAGTAGTGGAAGAAACGATAATGGAAATGGGCCTAGAAGAATGTGCAGATACTAGGATTGGGAATTGGCACTCAAGAGGTATAAGTAATGGTGAAAAGAAGAGACTCAGCATTGCCCTTGAGATTTTGACACAACCCCATGTCTTGCTTCTGGATGAACCTACTAGTGGACTTGATAGTTCCTCAGCTTTCTATGTCATCCAAGCTCTAAGCAACATAGCTTGGAATGGAAAGATAGTTATTTGCTCCATTCACCAACCAAGTAGTGAAACTTTTGAACTTTTTGATGATTTGCTCTTGCTCTCAAGCGGGGAGACTGTTTATTTTGGAGAAGCAAAAATGGCTCTAAAGTTTTTTGCTGATGCAGGATTCCCTTGTCCTACCAGAAGGAATCCTTCTGACCACTTCATTCTGTGCATTAATTTGGATTTTGACTTGGTTGCTGAAACTCTAGCAAGATCTCATCATTTAAGTCTTTCAACATCATCCAACTCGGTAGTCGGCATGAAAACAACAGAGATTAGAGCAGCACTCATTGAGAGTTACAAAAGTTCAGACCTAATGGTCAATGCAAGAAGAAGAGCTCAACAACTGAAACAGCCCAATGAAGATGAAGAACAAGTAATTGAGTCCAATCTAAGGAACACTACTAGCTGGTTCAGACAAGTATGCACATTGACACAGAGATCTTTCCTAAACATGACTAGGGACATTGGCTACTACTGGTTGAGGATCATATTCTACATAGCAGTGTCAATCTGCATAGGTACACTCTTTTTCCATATTGGAACAAACAGCAACTCAATCTTGGCTAGAGCAAAGTGTGTGTCTTTCATCTATGGGTTCATGATTTGTTTGTCATGTGGAGGATTGCCATTTTTCATTGAAGAATTGAAGGTGTTCTATAGTGAAAGGTCCAAAGGGCATTATGGAGAGGCTGCATTTGTACTATCAAACATTATATCATCATTTCCTTTCCTTCTTCTAATATCACTCTCCTGTGGGATAATTATCTACTTCATGGTGCAATTTCATCCTGGTTTAAATAGCTGTGCATTTTTCTGCATCAACTTATTCTGCTGCCTATCTGTTGTTGAGAGCTGCATCATGGCTGTAGCCGCAGTGGTCCCCAATATGATGATGGGCATAGGAGTAGGAACTGGTGTTATAATTTTCATGATGATGGCCTCCCAAATATTCAGACCACTACCTGACATTCCAAAGTTCTTTTGGCGCTATCCCATGTCCTACCTCAGTTTTGCTACTTGGGCAGTGCAGGGACAATACAAGAATGACATGCTAGGGCTTGAATTTGATCCTCTGGTATCTGGGAACCCTAAAGTTTCAGGAGAGCAAGTCCTAACAACGGTGTTCGGGGTTCCACTGAATCATGGCAAATGGTGGGACTTAGCAGCACTGGTTACTCTACTATTATTTCACAGAATGCTTCTTTTCATAGTTCTTCATTTTCTCCACAAACACTCGTCAATTGTCAAGTGTTATGCATTGGAAAAGACGGTAGCCGTGTTTTTGTGTATATATTTCATTCATTGGAAATTTGGAATGCTCAGAATGTACAGGCATAGACCAACAATGTGTAACATAATTAGAATACTTCCCACCAATGTTAGCATGACTGGAAATGTCCTGCTCAATGGGTCCGAGAGAAGAAGAGGCTGCAGAGACATTTCATACATTACTCAAGAAGATTATTTCTTGGGCACTCTAACAGTGAGGGAAACCCTCACATATGCTGCACATTTAAGGCTTCCTTCAAACATGACTAAAAATGAGATTGACGAGGTGGTAACCAAGACATTGGATGAAATGGGACTGGAAGATAATGCAAATACCAGACTTGGGAATTGGCACATGAGAGGCATAAGCAATGGAGAGAAAAGAAGGCTTAGCATAGGCATTGAAATCTTAACACAACCTCAAATCATGTTTCTTGATGAACCCACAAGTGGGTTGGACAGTGCATCTTCTTTCTATGTGATCTCATCTCTGAGAAGCATAGCCCATGATGGAAGAATAGTTATCTGCTCTATTCACCAGCCATGTAGTGAAGTTTTCAACCTTTTTGATGATCTGGTCATCCTTGCAGGAGGTGAAACAGTGTATTTTGGAGAAAGAACTATGGCTTTAAAGTTCTTTGCTGATGCAGGGTTCCCTTGTCCAACAAGAAAAAATCCTCCAGAGCACTTCCTTCGTTGTGTTAGTCCTGAGTTTGATAGTGTTGTTGCAACCTTAATAGACTCCAGAAATGGAAATGAAGCTTCACCCTCAGGCAATTCTCTAATGAGTATGACAACAGAGGAGATTAAATTGAAACTCATACTGAAGTACAGGTTTTCCGTGTACTCAGATAAAGCAAAGAAAAAAATCAGAGAAATCAAACTAAGAGAAGAACCTTTTATTGGGAGGACATATGATACCAGTAGTCTGAAGCAGCTATGCACACTGACAAATAGATCACTCTTAAACATGAGCAGAGACATTGGTTACTACTGGTTAAGAATGTTGTTCTTTATCTTGCTCTCAGTGAGTGCTGGTTTTATTTGCTTAAATATAGGAACAAGCTATGAAGCAATCTTGTCAAGAGGCAAGTTTGATGGATTCATTTATGGCTTCATGATCTTCCTCTGTGTTGGAGGCTTACCCTTTTACCTAGAGGAAATAAAGGTCTTCAAGCGCGAAAGGTTTGGGAGGCATTATGGGGAGGCTGTCTATGTGCTGTCACATTTCCTCTCATCATTACCTTTTGTCATTGCAATTTCCCTCTCTTCAGGAGCAACACTTTACAACATGGTGAAATTTCATCCAGGCTTCTCTCATTACTGCTATTTTAGCATAAACCTACTTTTCAGCATTTCTGTGGCAGAAGGGTGCATGCTATCTATTGCAGCATTTGTGTCCAACCAATTGTTAGCCCTTGGAGCTGCAACTGGTGTAACTGTATTCATGATGATGCCATCTAACTTATTCAGAAGTCTAACAGACATTCCAAAATTCTTCTGGCGCTACCCCATGTCCTACATCAGCTACATTGCATGGTCAATACAGGGCCAATTCAAGAATGACCTGATTGGACTTGAATTTGAACCATTGGTGCCAGGGGATTCTAAGATAAAGGGTGAAGTGATACTAAGTGACATGTTTGGAATTGAACCAAATTATTCAAAATGGTGGGATTTAGCAGTGCTGGCTTGCTTATTAGTATTTTATAGATTGCTATTTTTCTTGGTTCTTAAGTACAAGGAGAGAGCTTCATCACTATTACAAACCAAAAAGAGTTTGATGGGCATTTTACTCAAGAGACCTACATTGAAGGACACATATATTTCTTCTAAGCGACACCGTTCCATGTATCCTTTGTCAGAACAAGAGGGGCTTTCCTCACCAATGGCCTAA	3795	0.4082	MGGVGERGAAMDAMVMAWEDLTVELPNKKFLLHGITGFAQPGRIMAVMGPSGCGKTTLLDSLAGKHSANVIVTGNIHINGKNRSLYYRQVCYVAQEEIFLGTLTVRESLTYSAYMRLPSDMTKEETNKVVEETIMEMGLEECADTRIGNWHSRGISNGEKKRLSIALEILTQPHVLLLDEPTSGLDSSSAFYVIQALSNIAWNGKIVICSIHQPSSETFELFDDLLLLSSGETVYFGEAKMALKFFADAGFPCPTRRNPSDHFILCINLDFDLVAETLARSHHLSLSTSSNSVVGMKTTEIRAALIESYKSSDLMVNARRRAQQLKQPNEDEEQVIESNLRNTTSWFRQVCTLTQRSFLNMTRDIGYYWLRIIFYIAVSICIGTLFFHIGTNSNSILARAKCVSFIYGFMICLSCGGLPFFIEELKVFYSERSKGHYGEAAFVLSNIISSFPFLLLISLSCGIIIYFMVQFHPGLNSCAFFCINLFCCLSVVESCIMAVAAVVPNMMMGIGVGTGVIIFMMMASQIFRPLPDIPKFFWRYPMSYLSFATWAVQGQYKNDMLGLEFDPLVSGNPKVSGEQVLTTVFGVPLNHGKWWDLAALVTLLLFHRMLLFIVLHFLHKHSSIVKCYALEKTVAVFLCIYFIHWKFGMLRMYRHRPTMCNIIRILPTNVSMTGNVLLNGSERRRGCRDISYITQEDYFLGTLTVRETLTYAAHLRLPSNMTKNEIDEVVTKTLDEMGLEDNANTRLGNWHMRGISNGEKRRLSIGIEILTQPQIMFLDEPTSGLDSASSFYVISSLRSIAHDGRIVICSIHQPCSEVFNLFDDLVILAGGETVYFGERTMALKFFADAGFPCPTRKNPPEHFLRCVSPEFDSVVATLIDSRNGNEASPSGNSLMSMTTEEIKLKLILKYRFSVYSDKAKKKIREIKLREEPFIGRTYDTSSLKQLCTLTNRSLLNMSRDIGYYWLRMLFFILLSVSAGFICLNIGTSYEAILSRGKFDGFIYGFMIFLCVGGLPFYLEEIKVFKRERFGRHYGEAVYVLSHFLSSLPFVIAISLSSGATLYNMVKFHPGFSHYCYFSINLLFSISVAEGCMLSIAAFVSNQLLALGAATGVTVFMMMPSNLFRSLTDIPKFFWRYPMSYISYIAWSIQGQFKNDLIGLEFEPLVPGDSKIKGEVILSDMFGIEPNYSKWWDLAVLACLLVFYRLLFFLVLKYKERASSLLQTKKSLMGILLKRPTLKDTYISSKRHRSMYPLSEQEGLSSPMA*	1265

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g1310	1264	Gene3D	-	657	849	IPR027417	-
	Lja1g1310	1264	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	610	855	IPR003439	GO:0005524
	Lja1g1310	1264	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	14	238	IPR027417	-
	Lja1g1310	1264	Pfam	ABC transporter	681	783	IPR003439	GO:0005524
	Lja1g1310	1264	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	671	843	IPR027417	-
	Lja1g1310	1264	Pfam	ABC-2 type transporter	945	1150	IPR013525	GO:0016020\|GO:0140359
	Lja1g1310	1264	Pfam	ABC-2 type transporter	348	554	IPR013525	GO:0016020\|GO:0140359
	Lja1g1310	1264	PANTHER	CASSETTE TRANSPORTER, PUTATIVE-RELATED	665	1222	-	-
	Lja1g1310	1264	PANTHER	CASSETTE TRANSPORTER, PUTATIVE-RELATED	14	634	-	-
	Lja1g1310	1264	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 11	665	1222	-	-
	Lja1g1310	1264	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 11	14	634	-	-
	Lja1g1310	1264	Pfam	ABC transporter	37	183	IPR003439	GO:0005524
	Lja1g1310	1264	Pfam	ABC-2 type transporter	212	264	IPR043926	GO:0140359
	Lja1g1310	1264	Pfam	ABC-2 type transporter	812	866	IPR043926	GO:0140359
	Lja1g1310	1264	Gene3D	-	6	249	IPR027417	-
	Lja1g1310	1264	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	16	255	IPR003439	GO:0005524
	Lja1g1310	1264	SMART	AAA_5	41	240	IPR003593	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g1310	Lja-Chr1	13704954	13724896	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g1310	39	216	Calmodulin-binding Proteins	AT2G36910	29.189	1.06e-12	71.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g1310	-		K05681	lja:Lj1g3v4239020.2	1182.16