Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1309 ATGGATCAGGGAGTGGTAAGTGATAATAAGGGGTTGTTGTTGGAATGTGGAATTAGAAAGTGCAATCCACCACCGTTCTTATTGAAGACATACATGCTGGTAGAGGATCCAACCACCGATGAAGTGATATCATGGAACGATGAAGGGACGGCGTTCGTCGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTCCTCCCAACTCTCTTCAAGCACAGCAACTTCTCTAGCTTTGTCCGGCAACTCAATACCTATGGCTTTCGTAAAGTTGCAACAAGCCGATGGGAGTTCTGCAACGACAAGTTCCGAAAAGGTGAAAGAGAACTCCTAACTGAGATTCAGAGAAGAAAAGCATGGAACAGTACCAAGCAGCAGCAACAACAACAACCCAATACCACACCAAACCAAGGCACACTCCAAGATTCTGATGAAGACCAAAGGTCGTCATCAACCTCATCATCTTCGGGTTTAACGAGTCTTGTGAATGAAAACAACCGGCTCAAGAAGGAGAACGGTGTGTTGAATTGTGAGCTAACAAATATGAAAAGGAAGTGTAGGGATCTGCTTGATTTGGTTGCTAAATATTCTTCACATGCAAAGGAGGAAGAAGATGAAAGGCCAATGCTGTTTGGAGTGAGACTAGATGTTCATGGAGAGAGGGAGATGAAAAGGAATAGAGCTGAGATAAGTGAAACTGCTAGCATCTTGCTGTCTCAGTCATGCAAATAG 726 0.449 MDQGVVSDNKGLLLECGIRKCNPPPFLLKTYMLVEDPTTDEVISWNDEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNDKFRKGERELLTEIQRRKAWNSTKQQQQQQPNTTPNQGTLQDSDEDQRSSSTSSSSGLTSLVNENNRLKKENGVLNCELTNMKRKCRDLLDLVAKYSSHAKEEEDERPMLFGVRLDVHGEREMKRNRAEISETASILLSQSCK* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1309 241 MobiDBLite consensus disorder prediction 117 163 - -
Lja1g1309 241 SUPERFAMILY "Winged helix" DNA-binding domain 22 115 IPR036390 -
Lja1g1309 241 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g1309 241 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g1309 241 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g1309 241 Gene3D - 18 116 IPR036388 -
Lja1g1309 241 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-3 9 241 - -
Lja1g1309 241 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 241 IPR027725 -
Lja1g1309 241 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g1309 241 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g1309 241 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja1g1309 241 Coils Coil 156 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1309 Lja-Chr1 13684276 13688186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1309 23 214 HSF AT2G41690 57.971 8.01e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja1g1309 HSF_DNA-bind 1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1309 K09419 - gmx:100802739 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1309 1 13684276 13688186 Lja1g1309 1 13684276 13688186 ECH