Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1307 ATGGCTTCATCTTCTTCCGATCCAGGCAAGTCGGCGGAGACTTCAGAAGCCGTCGCGGCGGCGAACGACCAGTTATTACTCTACAGAGGATTGAAGAAAGCGAAGAAGGAAAGAGGTTGCACCGCCAAAGAGAGAATCAGTAAAATGCCTCCTTGTGCCGCCGGTAAACGCAGCTCCATCTACCGCGGTGTCACCAGGCATAGATGGACTGGTCGCTATGAAGCGCATCTTTGGGATAAAAGTACATGGAACCAGAATCAGAATAAGAAAGGAAAGCAAGTTTACTTGGGGGCGTATGATGATGAGGAAGCGGCGGCTAGAGCGTATGATCTTGCTGCTCTGAAATATTGGGGTCCTGGGACTCTCATTAACTTCCCAGTGACTGATTATACAAGAGATCTTGAAGAAATGCAGAATGTTTCCAGAGAAGAATACCTGGCGTCTTTACGGCGGAAGAGCAGTGGTTTTTCAAGAGGGCTATCAAAATATCGAGGACTCTCCAGTCGATGGGAGACATCATATGGCCGTCTTGCGGGATCAGATTACTTCAGTAGCATACATTATGGGGATGATTCAGCAGCAGAAAGTAAATATGTAAGTGGTTTCTGCCTAGAAAGAAAGATTGATTTAACCAGTTACCTCAAATGGTGGGGATCTAACAAGAGTCGACAAGCTGACGCTGGGTCAAGATTATCAGAAGACAAGAAACATGGTTTTGCTGGAGATATTTGCAGTGAACTTAAAACATTGGAACAGAAACTCCAACCCACAGAACCATACCAGATGCCAGAGCTAGGAATGTCCCACAATGACAAAAAGCATAAAAGTTCTTCAGTCTCGGCCTTAAGTATATTGTCCCGATCTGCTGCTTACAAGAGCTTGCAAGAGAAAGCGTCAAAGAGACAGGAAAATAGTGCTGATAATGATGAGAATGAAAACAAAAATATAGTCAATGAGTTGGATCATGGAAAGGCAGTTGTGAAACCATCAAATCACGATGGCGGCAATGATCAACTTGACATTGCAATGGGAATGAGTGGGGCATTGTCTCTTCAAAGAACTGTTTATCCATTGGCACCATTCTTGTCTGCGCCGCTTTTGACAGCATACAATATTGTTGATCCATTGGTAGATCCTGTTCTCTGGACATCTCTTGTTCCTGTACTTCCTGCTGGACTTTCTCGCACAGCTGAGGTTACCAAGACAGAGTCCAGTTCAGGTTATACTATGTTTCAGCCAGAGGAGTGA 1248 0.4487 MASSSSDPGKSAETSEAVAAANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWETSYGRLAGSDYFSSIHYGDDSAAESKYVSGFCLERKIDLTSYLKWWGSNKSRQADAGSRLSEDKKHGFAGDICSELKTLEQKLQPTEPYQMPELGMSHNDKKHKSSSVSALSILSRSAAYKSLQEKASKRQENSADNDENENKNIVNELDHGKAVVKPSNHDGGNDQLDIAMGMSGALSLQRTVYPLAPFLSAPLLTAYNIVDPLVDPVLWTSLVPVLPAGLSRTAEVTKTESSSGYTMFQPEE* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1307 415 PRINTS Ethylene responsive element binding protein signature 108 128 IPR001471 GO:0003700|GO:0006355
Lja1g1307 415 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Lja1g1307 415 Coils Coil 299 319 - -
Lja1g1307 415 Pfam AP2 domain 60 118 IPR001471 GO:0003700|GO:0006355
Lja1g1307 415 ProSiteProfiles AP2/ERF domain profile. 60 126 IPR001471 GO:0003700|GO:0006355
Lja1g1307 415 SMART rav1_2 60 132 IPR001471 GO:0003700|GO:0006355
Lja1g1307 415 SUPERFAMILY DNA-binding domain 59 127 IPR016177 GO:0003677
Lja1g1307 415 PANTHER BNAA03G19580D PROTEIN 8 411 - -
Lja1g1307 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 411 - -
Lja1g1307 415 Gene3D AP2/ERF domain 60 128 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1307 Lja-Chr1 13642830 13646572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1307 18 399 AP2-EREBP Transcription Factor Family AT2G41710 65.473 2.51e-169 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja1g1307 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1307 K09285 - gmx:100814117 719.924