Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1300 ATGGGTGATGACTGTGATACTGATTCACATGCCCCATTAGATATTGATTCTAGTGGGTGTCACGAAAACTTCATCCCTCATTCACTGGAAGAATGTAAGGCTGAAATCCTTTCTTTTGATGAAAATGATGATGTTGATGTGCCCCAGCCTGGGATGATATTTAGTTCGGTGGATGAAGTCAGATCGTATTACAAAAACTTTGCCGACCGATTAGGCTTCCGCATCAAGATTAGAACCTCGAGAAAGGGGCGTGATGGCAGAGTTAAATACATAAGACTTCAATGCACTGGAGCTGCGGGAGATAGAGGGGGTAATAAAGGAGTAAGAAATACTTGTAGCTACATGAAACCAAATTGTGATGCCAAGATAACCGCGATGTTGTCTAAAGATGGAACCTTCCGAGTAAACACAGTTACACTCAGTCACAATCATGAATTGAGTTCACATGGAATCTTAAAGAGTATTGACATGCGTGGTAAGAAGATACTGGGTCAGATGAAGGTAGACATGTGTGTTAAGATGACATCAAGCCAAAATGACAGCGGAAACTACCCTAAGAAAATAAGGCATTTGATTGGGGAGAATGGAGATAGTGAATCCCTTCAAAAGTATTTGGTAAGGATGCAGAAACAAGATAGCAACTTCTTCTATACAGTTGACGTTGATGATTTCTTCACCGTGAGGAATGTTTTTTGGGCTGATGGGAGAAGTAGGGCTGCATATGAATCATTTGGTGATGTGCTGACAGTTGATACTACATATCTCTTTAATCAATACAAAATGCCACTTGCAACTTTGGTTGGAGTAAACCATCATGGGCAATCTGTACTTTTTGGTTGTGCGCTGTTGTCAAGTGAAGACTCAGAGTCATTCGTTTGGCTGTTTCAATCATTGCTACATTGCATGTCTGGTGTTCCCCCACAAGGAATCATAACAGATCATAGTGAGGCCATGAAGAAGGCGATTGAAACTGTGCTCCCATCCACTCGACATCGTTGGTGTTTATCATATATAATGAAAAAACTTCCCCAAAAACTACTGGGATATGCTCAGTACGAGTCCATAAGACATCATTTGCAGAATGTTGTGTATGATGCAGTCGTAATAGATGAGTTTGAGAGGAACTGGAAGAAAATTGTGGAGGATTTTGGCCTTGAGGACAATGAATGGTTGAATGAATTGTTTCTTGAGCGCCATCACTGGGTTCCTTCCTTTGTAAGAGGTAATTTTTGGGCTGGAATGTCTGTTAATCTACATAATGAAAGCATGCATGCGTTTTTTGATGGATATGTAAACCAGCACACAACTTTGTTGCAATTTATTGATCAATATGATAATGCTTTGCAATACAAGGCAGAGCAGGAGTATGTAGCTGATGTACATTCATCTTGTAGCACTCAGTCTTGTATTACCCATTCTCTCATTGAGCGGCAGTTTCAATCTGCATACACTAATGCAAAATTTCAAGAGGTTCAAGATGAGTTTGGTGGAAAGGGTGATTGTAACGTTTCTGTTGACCGAGTCGATGGTTCTGTTTGTCACTATAAGGTAATTGAAGATCGGATAATAGGTGATATGCCTAGGGAATATGTGGTTGAAGTAACTTATGACAGAGTAAATTGTGATGTAAAGTGTGATTGCCGCCTGTTTGAGTTCAGAGGGATACTTTGTAGGCACTCACTTGCCATACTGTCACAAGAACGAGTGAAGGAGGTACCGGATAGATATGTTTTGGATAGGTGGAGGAAAAACATGCGGAGGAAGTATGTTTATGTCAAAACCAGTTATTGTGTTCAACACCTTAAACCTCAAATGGAAAGGCTTGAATTGTTATGCAATCAATTCAAAAGTATTGCTGTATCCGCGGCTGAATTTGAGGAAACAAGTTCTTTTGTAAATGTTACACTCTGTAACTTGAAGGAGAAACTTGAAGCTTGGGTGCCTCATTTTGGAAACTCATCTCAGGTGGACATGGAGGAAGGTCAGTACATAAGCTCACCCTATGGTGCTGGAGATGTACTAATATGA 2028 0.4038 MGDDCDTDSHAPLDIDSSGCHENFIPHSLEECKAEILSFDENDDVDVPQPGMIFSSVDEVRSYYKNFADRLGFRIKIRTSRKGRDGRVKYIRLQCTGAAGDRGGNKGVRNTCSYMKPNCDAKITAMLSKDGTFRVNTVTLSHNHELSSHGILKSIDMRGKKILGQMKVDMCVKMTSSQNDSGNYPKKIRHLIGENGDSESLQKYLVRMQKQDSNFFYTVDVDDFFTVRNVFWADGRSRAAYESFGDVLTVDTTYLFNQYKMPLATLVGVNHHGQSVLFGCALLSSEDSESFVWLFQSLLHCMSGVPPQGIITDHSEAMKKAIETVLPSTRHRWCLSYIMKKLPQKLLGYAQYESIRHHLQNVVYDAVVIDEFERNWKKIVEDFGLEDNEWLNELFLERHHWVPSFVRGNFWAGMSVNLHNESMHAFFDGYVNQHTTLLQFIDQYDNALQYKAEQEYVADVHSSCSTQSCITHSLIERQFQSAYTNAKFQEVQDEFGGKGDCNVSVDRVDGSVCHYKVIEDRIIGDMPREYVVEVTYDRVNCDVKCDCRLFEFRGILCRHSLAILSQERVKEVPDRYVLDRWRKNMRRKYVYVKTSYCVQHLKPQMERLELLCNQFKSIAVSAAEFEETSSFVNVTLCNLKEKLEAWVPHFGNSSQVDMEEGQYISSPYGAGDVLI* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1300 675 Pfam FAR1 DNA-binding domain 62 147 IPR004330 -
Lja1g1300 675 SMART 26again6 543 570 IPR006564 GO:0008270
Lja1g1300 675 PANTHER OS03G0843700 PROTEIN 37 658 - -
Lja1g1300 675 Pfam MULE transposase domain 247 341 IPR018289 -
Lja1g1300 675 Pfam SWIM zinc finger 542 565 IPR007527 GO:0008270
Lja1g1300 675 ProSiteProfiles Zinc finger SWIM-type profile. 530 568 IPR007527 GO:0008270
Lja1g1300 675 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 37 658 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1300 Lja-Chr1 13550415 13553126 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g1300 MULE 6.7e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1300 - K17604 gmx:102663358 902.123