Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1299 ATGGGTGATGACTGTGATACAGATTCGCATGCCCCATTAGATAATAATTCTAGTGGGTGTCAGGAAACCTTGACTCCACTTTTACTGGCAGAATGTAAGGCTGAAGTCCTTCCTTTTGATGAAAATGATGATCTTCATGTGCCACAGCCCGGGATGATATTTAGTTCAGAGGATGAAGTCAGATCATATTACAAAGAATTTGCCAGCCAATTAGGCTTCCGGGTCATGACTAGAACCTCAAGAAAGGGACGTGATGGCAGAGTTAAATATTTAATACTTCAATGCTCTGGATCTGGAGGAAGTAATAAAGGAGGAATAAGTACGTACATGAAACCGAATTGTGAAGCCAAGATAACTGTGACATTGAATAAGGATGGGACCTGCCGAGTAAACACGGTTACTCTCAGTCACAATCATGAATTGAGTTCACATGGAATCTTAAAGAATATTGACATGCGGAGTAAGAAGATATCGGGTCAGAAGAATGTTGACGTGTGTGTTAAGAGGACGTCAAGTCAAAGTGACTGCAGAAACTACACTAAGAAAAGAAGGCATTTGCTTGGGGAGAATGGAGATAGTGAGGCCCTTCAAAAGTATTTTGGTAGGATGCAAAAACAAGATAGCAACTTCTTTTATACGGTTGACATTGATGATTTCTTCAGCGTGAGGAATGTCTTTTGGGCTGATGGGAGAAGTCGGGCTGCATACGAATCATTTGGTGATGTGCTGACTGTTGATACTGCATATCTCTTTAATCAATACAAAATGCCACTTGTAACTTTTGTTGGAGTAAACCATCATGGGCAATCTGTACTTTTTGGCTGTGCGTTGTTGTCAAGTGAAGACTTGGAGTCATTTGTTTGGCTCTTTCAATCATTGCTACATTGCATGTCTGGTGTTCCCCCACAAGGAATTATAACAAATCATTGCGAGGCCATGCAAAAGGCGATTGAAACTGTGCTCCCATCCACTCGACATCGTTGGTGTTTATCGTATATAATGAAAAAACTTCCCCAAAAGCTACAGAGATATCCTCAGTACGAGTCCATAAAACACCATTTGCAGAATGTTGTGTATGATGCAGTCTCAACAGATGAGTTTGAGAGGAATTGGATGAAGATTGTGGAGGATTTTGGCCTTGAGGACAATGAGTGGTTGAATGAATTGTTTCTTGAGCGGCATCACTGGGTTCCTTCCTTTGTCAGAAGTAGTTTTTGGGCTGGAATGTCCGTTAATCTACTTAATGAGAGCATGCATGCCTTTTTTGATGGATATGTAAACCAGCACACAACTTTGAAGCAATTTGTTGATCAATATGATAATACTTTGCAGTACAAGGCAGAGCAGGAGTACGTAGCTGATGTACATTCATCTTGTAGCACTAAGGCTTGTATTACCCAATCTCTCATTGAGCGGCAGTTTCAATCTGCATACACTAATGCAAAATTTCAAGAGGTTCAAGATGAGTTTGTTGGAAAGGCTGATTGTAATGTTTCTGTTGACCGAGTTGATGGTTCTATTTGTCACTATAATGTTGTTGAGGATGTGATAATCGGTGATATGCCTAGGGAATACGTGGTTGAAGTAACATATAACAGAGTGACTTGTGATGTAAAGTGTGATTGCCGCTTGTTTGACTTCAGAGGGATACTTTGTAGGCACTCACTTGCCATACTATCACAAGAACGAGTAAAGGAAGTACCGGGTAGTTATGTTTTGGATAGGTGGAGGAAAAACTTGAGGAGGAAGTATGTTTATGTCAAAACCAGTTATTGTGTTCAGCACCTTAAACCTCAAATGCAAAGGCTTGAATCCTTATGCAATCAATTTATAAGTGTTGCTGAAGCCGCAGCTGAATCTGAGGAAACAACTTCCTTTGTAAAGGTTACACTTTGTAACTTCAAGGAGAAGCTTGAAGCATGGGCACCCCATTTGACAAACTCATCTCAGGTGGACATAGAGGAAGCTCAGTGCATAAGTTCATCTTATGGTGCTGGAGATGCACTAACATGA 2013 0.4069 MGDDCDTDSHAPLDNNSSGCQETLTPLLLAECKAEVLPFDENDDLHVPQPGMIFSSEDEVRSYYKEFASQLGFRVMTRTSRKGRDGRVKYLILQCSGSGGSNKGGISTYMKPNCEAKITVTLNKDGTCRVNTVTLSHNHELSSHGILKNIDMRSKKISGQKNVDVCVKRTSSQSDCRNYTKKRRHLLGENGDSEALQKYFGRMQKQDSNFFYTVDIDDFFSVRNVFWADGRSRAAYESFGDVLTVDTAYLFNQYKMPLVTFVGVNHHGQSVLFGCALLSSEDLESFVWLFQSLLHCMSGVPPQGIITNHCEAMQKAIETVLPSTRHRWCLSYIMKKLPQKLQRYPQYESIKHHLQNVVYDAVSTDEFERNWMKIVEDFGLEDNEWLNELFLERHHWVPSFVRSSFWAGMSVNLLNESMHAFFDGYVNQHTTLKQFVDQYDNTLQYKAEQEYVADVHSSCSTKACITQSLIERQFQSAYTNAKFQEVQDEFVGKADCNVSVDRVDGSICHYNVVEDVIIGDMPREYVVEVTYNRVTCDVKCDCRLFDFRGILCRHSLAILSQERVKEVPGSYVLDRWRKNLRRKYVYVKTSYCVQHLKPQMQRLESLCNQFISVAEAAAESEETTSFVKVTLCNFKEKLEAWAPHLTNSSQVDIEEAQCISSSYGAGDALT* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1299 670 Pfam SWIM zinc finger 538 560 IPR007527 GO:0008270
Lja1g1299 670 SMART 26again6 538 565 IPR006564 GO:0008270
Lja1g1299 670 PANTHER OS03G0843700 PROTEIN 37 655 - -
Lja1g1299 670 Pfam MULE transposase domain 242 336 IPR018289 -
Lja1g1299 670 ProSiteProfiles Zinc finger SWIM-type profile. 525 563 IPR007527 GO:0008270
Lja1g1299 670 Pfam FAR1 DNA-binding domain 62 142 IPR004330 -
Lja1g1299 670 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 37 655 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1299 Lja-Chr1 13545518 13547530 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja1g1299 MULE 7.2e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1299 - K17604 gmx:102663358 897.116