Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1295 ATGTTACCATTGGGGTGGGGAACCAACAAGAGAGAAGGAACAACGTTCGTCATGGTCATCAACTTGAAGGTAAAACTTGTCACTTTCCTTTTGAAGTTTGAGTTCCTACCCCCCAAACACTTTGTTATTCTGAATCTTTTTTTCCCCTGTCCAGTGCAAGAAGCGGAGAAAACCAAGCTGGTTTTCTTTGAAGGCTCCGCTTATAATTTTGATTTTGAAGATTTGCTGAGGGCTTCAGCTGAACTTCTTGGAAAGGGTAGTTATGGTACTACATATAAGGCTATCTTGGAGGAGTCAACAACAGTTGTGGTGCAAAGGTTGAAAGAAGTTGGAGTAGGCAAGCGGGAATTTGAACAGCAGATGGAGATCTTGGGAAGGATAGGACAGCACCCGAATGTGCTGCCTCTTCGCGCTTATTATTATTCAAAAGAAGAGAAGCTTTTGGTTTATGACTATATCCCAAATGGCAATCTATCTTCCCACTTGCATGGTAATAGAGCAGGTGGAAGAACTCTATTAGATTGGAACTCCAGAGTAATAATCTCTATTGGAATTGCCAGAGGAATTGCTCACTTACATTCAGTTGGCGGTCCGAAATTCACTCATGGAAATATCAAAGCCTCAAATGTCCTCCTTAACCATGATAATGATGGCTGCATTTCTGATTTTGGCATGACCCCACTCATGAATGTTCCTGCAACCCCTTCTAGAGCTGCAGGTTATCCTGCTCCCGAGGTGATTGAAACCCGGAAGCACACTCATAAATCAGACGTGTACAGTTTTGGTGTGATCCTTCTGGAAATGCTTACAGGGAAAGCGCCACAACAGTCTCCGGGACATGATGACATGGTTGATCTCCCTAGGTGGGTCCAGTCTGTTGTTAGGGAGGAGTGGACAGCCGAGGTATTCGATGGGGAGCTAATGAGGTACCAAAATATAGAAGAAGAAATGGTGCAAATGTTGCAAATCGGCTTGGCATGTGTGGCGGAGGTTCCAGATATTAGACCAAGCATGGAGGAAGTAGTGAGAATGATAGAAGAGATCCGGCAATCTGACTCAGAGAATCAGCCATCTTCCGACAAGAACAAATCCAAGGACTTAAATGTTCCAACTCCATGA 1119 0.4415 MLPLGWGTNKREGTTFVMVINLKVKLVTFLLKFEFLPPKHFVILNLFFPCPVQEAEKTKLVFFEGSAYNFDFEDLLRASAELLGKGSYGTTYKAILEESTTVVVQRLKEVGVGKREFEQQMEILGRIGQHPNVLPLRAYYYSKEEKLLVYDYIPNGNLSSHLHGNRAGGRTLLDWNSRVIISIGIARGIAHLHSVGGPKFTHGNIKASNVLLNHDNDGCISDFGMTPLMNVPATPSRAAGYPAPEVIETRKHTHKSDVYSFGVILLEMLTGKAPQQSPGHDDMVDLPRWVQSVVREEWTAEVFDGELMRYQNIEEEMVQMLQIGLACVAEVPDIRPSMEEVVRMIEEIRQSDSENQPSSDKNKSKDLNVPTP* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1295 372 MobiDBLite consensus disorder prediction 347 361 - -
Lja1g1295 372 Pfam Protein tyrosine and serine/threonine kinase 81 344 IPR001245 GO:0004672|GO:0006468
Lja1g1295 372 Gene3D Transferase(Phosphotransferase) domain 1 153 370 - -
Lja1g1295 372 PANTHER OS05G0588300 PROTEIN 49 372 - -
Lja1g1295 372 SUPERFAMILY Protein kinase-like (PK-like) 81 354 IPR011009 -
Lja1g1295 372 ProSiteProfiles Protein kinase domain profile. 77 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1295 372 PANTHER LRR RECEPTOR-LIKE KINASE 49 372 - -
Lja1g1295 372 MobiDBLite consensus disorder prediction 347 372 - -
Lja1g1295 372 CDD STKc_IRAK 83 348 - -
Lja1g1295 372 Gene3D Phosphorylase Kinase; domain 1 49 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1295 Lja-Chr1 13497567 13499057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1295 52 369 Receptor kinase-like Gene Family AT5G58300 75.000 5.75e-178 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja1g1295 PK_Tyr_Ser-Thr 5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1295 - - gmx:100818344 566.229