Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1292 ATGGGAATTCTTTGCTTGTTGCATCTTCTGCTAGGTTGGTGGTACCTATCAAAGTGTGAGCTTGTTGGTGCTGAGTTCCAGGACCAAGCTACAATTAATGCTATCAACCAAGAGCTTAGAGTACCTGGATGGGGTGATGGAAACAATTCAAATTACTGCACTTGGCAAGGAGTCATCTGTGGTAATCACTCAATGGTGGAGAAGCTCGATCTTGCTCACCGGAACCTTCGAGGTAATGTGACTTTAATGTCTGAGCTCAAAGCTCTGAAGAGGCTTGATCTTTCAAATAATAACTTTGGTGGATTGATTCCTCCTGCTTTTGGAATTTTATCTGATCTTGAAGTTCTAGATCTGTCTTCTAATAAGTTTGAAGGTTCAGTTCCACCACAGTTGGGTGGTCTCAGAAGCCTTGTTTCATTAAACCTTTCAAATAATGTGCTTGTGGGAGAGATACCAATGGAACTTCATAGGCTAGAGAAATTGCAAGATTTGCAAATTTCTAGTAATCATTTGAGTGGTTTTATACCTTCTTGGGTGGGGAATTTGACTAACCTGAGAGTTTTTACTGCTTATGAGAATCGTTTAGATGGCAGGATTCCAGATGATCTAGGCTTGATTCCTTATCTTCAAATACTTAACCTGCATTCTAACCAGCTAGAAGGTCCAATACCAGCAAGCATTTTTGCTTCAGGGAAGCTAGAAGTTCTGATTCTCACCCAGAATAATTTTAGTGGTGACCTTCCTGAGGAAATTGGGAATTGCCATGCCCTTTCCAACGTTCGCATTGGAAACAACCATTTAGTAGGCACTATTCCTAAAACCATTGGAAATCTTAGTAGCCTAACCTACTTTGAAGCCGATAATAATAATCTCTCCGGTGAGGTAGTTTCAGAATTTGCTCAGTGTTCTAATCTCACCCTCTTGAATCTAGCTTCAAACGGATTTTCCGGAACAATTCCACAAGAATTTGGACAACTTACGAACCTTCAGGAGTTAATTCTTTCAGGAAATAACCTGTTTGGTGATATTCCAAAATCAATTCTGAGTTGCAAAAGTCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACGATACCAAATGAAATCTGCAATATTTCTCGGTTGCAGTACTTGCTATTGGATCAGAATTCCATAAGAGGAGAGATCCCTCATGAAATTGGAATTTGTTCAAAACTTCTTGAATTACAATTGGGCAATAATTATTTGACTGGAACTATTCCTCCTGAGATTGGTCACATTAGGAACTTACAGATAGCTTTAAATCTGAGTTTCAATCATCTTCATGGACCACTTCCCCCTGAATTGGGAAAACTGGACAAGCTTGTTTCTCTGGATGTGTCGAACAATCGGCTCTCAGGTAATCTGCCAGCTGAGCTTAAGGGAATGTTGAGCTTGATAGAGGTGAACTTCTCGAATAATCTGTTTGGAGGCCCTGTACCGACATTCGTACCATTCCAGAAGAGTCCTAGTTCAAGTTTTTCGGGCAATAAAGGGCTTTGTGGAGAGCCATTGAACTCTTCATGTGATCCTTATGATGATCAGAGGACTTACCATCACAGGGTTTCCTACAGAATCATACTGGCCGTAATTGGTTCTGGTTTGGCAGTTTTTATTTCAGTAACTGTTGTTGTCTTGCTCTTTATGATAAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCCGGCATTGTTGAAGATGTAATCGATGACAATCCAACTATAATAGCAGGGAGTGTCTTTGTTGATAATCTAAAACAAGCGGTAGACCTTGATGCTGTCGTTAAAGCAACTCTAAAAGACTCCAATAAGCTCAGCAGTGGAACTTTCAGCACAGTTTACAAGGCAATCATGCCTTCCGGGATGGTGTTATCTGTTCGGAGATTGAAGTCCATAGACAAGACAATAATCCAACACCAGAACAAGATGATTAGAGAGCTTGAGAGACTAGGAAAAGTCTCTCATGATAATCTAGCACGACCCGTTGGCTATGTTATTTATGAAGATGTTGCTCTTCTCTTGCATCATTATTTTCCGAACGGAACATTGACTCAGTTTCTTCATGAGTCTACCTTGCAACCTGAATATCAGCCTGACTGGCCTGCTAGATTATCCATTGCCATCGGAGTCGCAGAAGGTTTGGCTTTCCTTCATCATGTGGCAATTATCCATCTTGATATTTCTTCTGGCAATGTTCTTTTGGATTCAAACTTTAAGCCATTAGTTGGGGAGATTGAGATTTCAAAACTTCTGGATCCAACCAGAGGCACTGCAAGTATTAGTGCAGTTGCTGGTTCCTTTGGTTACATACCCCCAGAATATGCATACACAATGCAAGTCACAGCACCCGGAAATGTTTACAGCTATGGCGTTGTTCTGCTGGAAATCCTCACAACTCGGCTTCCAGTTGATGAGGAATTTGGTGAAGGTGTGGATTTGGTGAAGTGGGTTCACAGTGCTCCGGTAAGAGGGGAAACTCCAGAGCAGATACTGGATGCAAGGCTTAGCACAGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTCTAAAGGTCGCGCTACTTTGTACTGACAACACACCAGCGAAACGACCGAAAATGAAGAATGTAGTAGAAATGCTTCAAGAGATAAAGCAAAGCTGA 2664 0.4125 MGILCLLHLLLGWWYLSKCELVGAEFQDQATINAINQELRVPGWGDGNNSNYCTWQGVICGNHSMVEKLDLAHRNLRGNVTLMSELKALKRLDLSNNNFGGLIPPAFGILSDLEVLDLSSNKFEGSVPPQLGGLRSLVSLNLSNNVLVGEIPMELHRLEKLQDLQISSNHLSGFIPSWVGNLTNLRVFTAYENRLDGRIPDDLGLIPYLQILNLHSNQLEGPIPASIFASGKLEVLILTQNNFSGDLPEEIGNCHALSNVRIGNNHLVGTIPKTIGNLSSLTYFEADNNNLSGEVVSEFAQCSNLTLLNLASNGFSGTIPQEFGQLTNLQELILSGNNLFGDIPKSILSCKSLNKLDISNNRFNGTIPNEICNISRLQYLLLDQNSIRGEIPHEIGICSKLLELQLGNNYLTGTIPPEIGHIRNLQIALNLSFNHLHGPLPPELGKLDKLVSLDVSNNRLSGNLPAELKGMLSLIEVNFSNNLFGGPVPTFVPFQKSPSSSFSGNKGLCGEPLNSSCDPYDDQRTYHHRVSYRIILAVIGSGLAVFISVTVVVLLFMIRERQEKVAKDAGIVEDVIDDNPTIIAGSVFVDNLKQAVDLDAVVKATLKDSNKLSSGTFSTVYKAIMPSGMVLSVRRLKSIDKTIIQHQNKMIRELERLGKVSHDNLARPVGYVIYEDVALLLHHYFPNGTLTQFLHESTLQPEYQPDWPARLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDSNFKPLVGEIEISKLLDPTRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEEFGEGVDLVKWVHSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLQEIKQS* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1292 887 Gene3D Phosphorylase Kinase; domain 1 579 684 - -
Lja1g1292 887 PRINTS Leucine-rich repeat signature 89 102 - -
Lja1g1292 887 PRINTS Leucine-rich repeat signature 110 123 - -
Lja1g1292 887 SUPERFAMILY Protein kinase-like (PK-like) 606 884 IPR011009 -
Lja1g1292 887 ProSitePatterns Tyrosine protein kinases specific active-site signature. 729 741 IPR008266 GO:0004672|GO:0006468
Lja1g1292 887 Gene3D Ribonuclease Inhibitor 25 192 IPR032675 -
Lja1g1292 887 SMART LRR_typ_2 447 470 IPR003591 -
Lja1g1292 887 SMART LRR_typ_2 158 182 IPR003591 -
Lja1g1292 887 SMART LRR_typ_2 326 350 IPR003591 -
Lja1g1292 887 SMART LRR_typ_2 86 109 IPR003591 -
Lja1g1292 887 SMART LRR_typ_2 110 134 IPR003591 -
Lja1g1292 887 SMART LRR_typ_2 206 230 IPR003591 -
Lja1g1292 887 Gene3D Ribonuclease Inhibitor 294 392 IPR032675 -
Lja1g1292 887 Gene3D Ribonuclease Inhibitor 193 293 IPR032675 -
Lja1g1292 887 Pfam Protein tyrosine and serine/threonine kinase 609 881 IPR001245 GO:0004672|GO:0006468
Lja1g1292 887 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 885 - -
Lja1g1292 887 SUPERFAMILY L domain-like 193 514 - -
Lja1g1292 887 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 1 885 - -
Lja1g1292 887 Gene3D Transferase(Phosphotransferase) domain 1 685 887 - -
Lja1g1292 887 SUPERFAMILY L domain-like 44 283 - -
Lja1g1292 887 Pfam Leucine rich repeat 327 387 IPR001611 GO:0005515
Lja1g1292 887 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Lja1g1292 887 ProSiteProfiles Protein kinase domain profile. 606 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1292 887 Gene3D Ribonuclease Inhibitor 393 519 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1292 Lja-Chr1 13419835 13423390 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1292 1 886 Receptor kinase-like Gene Family AT2G41820 72.135 0.0 1283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g1292 PK_Tyr_Ser-Thr 1.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1292 - - gmx:100789684 1554.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1292 1 13419835 13423390 Lja1g1292 1 13419835 13423390 ECH