Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1289 ATGGGGACTCCCGAATTTCCCGATCTTGGCAAACATTGCTCCGTCGCTGATTGCAAGCTCATCGATTTCTTGCCCTTCACCTGCGATCGCTGCAATCAGGTATATTGTTTGGAGCACCGAAGTTATATAAAGCATCAGTGTACTAAAGCTGACAAACGAGATGTCACTGTTGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTAATTCCAGAACAAGATCCAAACATAACTTGGGAGAATCACGTTAACACCGACTGTGACCCATCAAATTATGAGAAAGCCACAAAGAAGATAAAATGCCCGGTCCCTGGGTGCAGGGAGATCTTGGTGTTCTCAAACACAATCAAGTGCAGGGACTGCTTGGTTGACCATTGTTTGAAGCACCGGTTTGGACCTGATCACAAATGTTCCGGACCCAAAAAGTTGGAAACAAGTTTTTCATTTATGAGTTTTATGAATAGGAGTAGAAAAGATGCGCCAAAACCCAATTTAACTTCATCCTCATCATCGAACTGGACTACAAGCTTTCTTAACATGGCTTCGAATATTCGAGCTTCAGCTGAAGCGAGCATATCAAAATTGAGTGGTGAAACTAACCAAGCCATGCAGACATCACGGGGTGGTGTGGGACAGAGCAGTGGCAGTGGGAATAGAAATTATCAAGCGGAGCAATGCCCTCAGTGCAGCGCGAAGTTTTCCTCAGTCACTGCACTGGTGGATCATGTTCAAAAAGTTCATGAAAGGAGTGGCAACCGATCTGGGGTGAAGAAGACAATTGATGCATGTCCCAAGTGTAGTAAAGGATTTCTAGACCCGGTTTCGCTTGTAGAGCATGTTGAAAGGGATCATGGTGGTAGTTCTAGAGCATAG 873 0.449 MGTPEFPDLGKHCSVADCKLIDFLPFTCDRCNQVYCLEHRSYIKHQCTKADKRDVTVVICPLCAKGVRLIPEQDPNITWENHVNTDCDPSNYEKATKKIKCPVPGCREILVFSNTIKCRDCLVDHCLKHRFGPDHKCSGPKKLETSFSFMSFMNRSRKDAPKPNLTSSSSSNWTTSFLNMASNIRASAEASISKLSGETNQAMQTSRGGVGQSSGSGNRNYQAEQCPQCSAKFSSVTALVDHVQKVHERSGNRSGVKKTIDACPKCSKGFLDPVSLVEHVERDHGGSSRA* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1289 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 261 289 IPR013087 -
Lja1g1289 290 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Lja1g1289 290 Pfam C2H2-type zinc finger 225 247 - -
Lja1g1289 290 Gene3D - 2 58 IPR035896 -
Lja1g1289 290 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Lja1g1289 290 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Lja1g1289 290 Gene3D - 80 150 IPR035896 -
Lja1g1289 290 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Lja1g1289 290 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Lja1g1289 290 ProSitePatterns Zinc finger C2H2 type domain signature. 263 284 IPR013087 -
Lja1g1289 290 MobiDBLite consensus disorder prediction 195 221 - -
Lja1g1289 290 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Lja1g1289 290 ProSitePatterns Zinc finger C2H2 type domain signature. 226 247 IPR013087 -
Lja1g1289 290 SMART c2h2final6 99 129 IPR013087 -
Lja1g1289 290 SMART c2h2final6 261 284 IPR013087 -
Lja1g1289 290 SMART c2h2final6 224 247 IPR013087 -
Lja1g1289 290 SUPERFAMILY AN1-like Zinc finger 6 51 IPR035896 -
Lja1g1289 290 Gene3D Classic Zinc Finger 198 287 - -
Lja1g1289 290 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 290 - -
Lja1g1289 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 252 IPR013087 -
Lja1g1289 290 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 290 - -
Lja1g1289 290 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1289 Lja-Chr1 13391086 13393158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1289 1 290 C2H2 Transcription Factor Family AT2G41835 62.329 2.31e-123 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g1289 zf-AN1 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1289 - - gmx:100806459 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1289 1 13391086 13393158 Lja1g1289 1 13391086 13393158 ECH
Lja1g1289 1 13391086 13393158 Lja5g2224 5 37144980 37147064 PCT