Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1286 ATGGGAAACTGCTGCGCGACGCCAACGGTTACCGGCGAGGAGGTAAGAACCAACAACAAGAAAGAGAAGAAGGGGAAGAAGGAGAACCCCTTCGCGGTCGACTATGTCGCCAACAACGGCGGTTCCAAGCTCGCCGTGCTCAGCGACCCTACCGGGAGCGAGATCGAGGAAAAATACGCTCTCGGCCGCGAGCTCGGGAGAGGAGAGTTCGGTATAACGTATCTCTGCACGGATAAGGAGAACGGTGAGGAGTATGCCTGCAAGTCGATTTCGAAGAAGAAGCTGAGAACCGCCATCGATATTGAAGATGTGAGGAGGGAGGTGGAGATCATGCGCCATCTTCCCAGGCATCCGAACATCGTGTGGCTTAAGGATACGTATGAGGATGACAATGCCGTTCACCTTGTCATGGAGCTCTGTGAGGGCGGTGAGCTCTTTGATCGCATCGTGGCGCGTGGACACTATACCGAACGCGCCGCCGCTGCTGTTACCAAAACGATTGTTGAAGTCGTTCAGATGTGCCACAAACACGGAGTGATGCATAGGGATCTCAAGCCTGAGAACTTTTTGTTTGCTAATAAGAAGGAAACAGCAGCTCTCAAAGCTATAGATTTTGGATTGTCAGTGTTTTTTAAACCAGGGGAAACATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTAAGGCGACATTATGGCCCAGAAGTAGATATCTGGAGTGCTGGAGTGATTCTATACATCTTACTTTGTGGTGTCCCACCATTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCAATTATACGATCAGTTGTTGATTTCAAAAGGGATCCATGGCCTAAAGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGTTAAATCCTGATCCTAAGCGGCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTAGTTCATGCAAAGAAAGCTCCCAATGTTTCTTTAGGAGAAACCGTTAAAGCAAGGCTGAAGCAATTTTCCGTGATGAACAAGCTTAAGAAGAGAGCTCTGAGGGTGATTGCCGAGCACTTGACAGTAGAAGAAGCTGCTGGTCTAAGAGAGGGATTCCAGGGAATGGATACAGCTAACCGAGGCAAGATTAACATTGATGAACTGCGAGCAGGGTTATTGAAACTAGGCCATCAAGTTCCTGATGCAGATCTCCAAATTCTTATGGAAGCTGGTGATGTTGACAGAGATGGGTACCTAAATTATGGAGAGTTTGTTGCCATTTCTGTTCATCTAAGAAAGATGGGAAATGATGAGCACCTTATCAAAGCCTTCAAATTTTTTGATGCGAACCAAAGTGGGTATATTGAGATTGAGGAGCTGCGTGATGCCTTATCTGATGAAGTTGAGACAAACAGTGAAGAAGTCATCAGTGCAATTATGCATGATGTGGACACAGATAAGGATGGGAAGATAAGTTATGAGGAATTTGCAACAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGACAATATTCAAGAGAGAGGTTTACCAGTCTCAGCCTGTCATTGATGAGGGACGGATCATTGCAAGTAAACAATGAAAAACAATGA 1608 0.4577 MGNCCATPTVTGEEVRTNNKKEKKGKKENPFAVDYVANNGGSKLAVLSDPTGSEIEEKYALGRELGRGEFGITYLCTDKENGEEYACKSISKKKLRTAIDIEDVRREVEIMRHLPRHPNIVWLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGETFNEIVGSPYYMAPEVLRRHYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLNPDPKRRLTAQEVLDHPWLVHAKKAPNVSLGETVKARLKQFSVMNKLKKRALRVIAEHLTVEEAAGLREGFQGMDTANRGKINIDELRAGLLKLGHQVPDADLQILMEAGDVDRDGYLNYGEFVAISVHLRKMGNDEHLIKAFKFFDANQSGYIEIEELRDALSDEVETNSEEVISAIMHDVDTDKDGKISYEEFATMMKAGTDWRKASRQYSRERFTSLSLSLMRDGSLQVNNEKQ* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1286 535 ProSiteProfiles EF-hand calcium-binding domain profile. 360 395 IPR002048 GO:0005509
Lja1g1286 535 PANTHER SERINE/THREONINE-PROTEIN KINASE 20 514 - -
Lja1g1286 535 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Lja1g1286 535 ProSiteProfiles Protein kinase domain profile. 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1286 535 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Lja1g1286 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Lja1g1286 535 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Lja1g1286 535 Pfam EF-hand domain pair 378 426 IPR002048 GO:0005509
Lja1g1286 535 ProSiteProfiles EF-hand calcium-binding domain profile. 468 503 IPR002048 GO:0005509
Lja1g1286 535 ProSitePatterns Protein kinases ATP-binding region signature. 65 88 IPR017441 GO:0005524
Lja1g1286 535 Pfam Protein kinase domain 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1286 535 CDD STKc_CAMK 58 316 - -
Lja1g1286 535 SMART serkin_6 59 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1286 535 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Lja1g1286 535 Pfam EF-hand domain pair 435 498 IPR002048 GO:0005509
Lja1g1286 535 Gene3D Transferase(Phosphotransferase) domain 1 145 325 - -
Lja1g1286 535 SUPERFAMILY EF-hand 346 524 IPR011992 -
Lja1g1286 535 Gene3D - 326 500 - -
Lja1g1286 535 CDD EFh 436 498 IPR002048 GO:0005509
Lja1g1286 535 SMART efh_1 400 428 IPR002048 GO:0005509
Lja1g1286 535 SMART efh_1 436 464 IPR002048 GO:0005509
Lja1g1286 535 SMART efh_1 472 500 IPR002048 GO:0005509
Lja1g1286 535 SMART efh_1 364 392 IPR002048 GO:0005509
Lja1g1286 535 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 20 514 - -
Lja1g1286 535 Gene3D Phosphorylase Kinase; domain 1 61 144 - -
Lja1g1286 535 SUPERFAMILY Protein kinase-like (PK-like) 57 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1286 Lja-Chr1 13352242 13356929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1286 1 533 EF-hand Containing Proteins AT5G19450 79.330 0.0 883
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja1g1286 Pkinase 1.6e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1286 K13412 - gmx:100790745 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1286 1 13352242 13356929 Lja5g2227 5 37487841 37492546 PCT