Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1279 ATGTGCTGTGAGTTTGAGCGGTTAAATCCTGCACCGTCTCTGTCGTTATCTCCTACTTTGACACGCGCCGTTGCATCGAGAAACTACGTGATGAATCACTTTACTGTTGACACTGGAGATTCTCTCGTGAGCCTGCTTGAGCTTGCAGCCAATAATGATGTTGAAGGTTTCAAAAGATTGATCGAGTGTGATCCTTCCTCTGTGGATGAGGTTGGGTTGTGGTATGGTCGTAGGAAGGGATCAAAGCAGATGGTCAATGAGCAAAGAACACCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATATCATGAAACTGATTCTTGCTGTATCTGATGTTGACATCAACCGACCTTGTGGTCTTGACAAGAGCACTGCCCTTCATTGTGCGGCATCAGGTGGGGCTGTAAACGCGGTTGAAGCTGTGAGACTGCTTCTGGCTGCAGGGGCTGATCCGAATTCTGTGGATGCCAATGGGCATAAACCTGTAGATGTTATTGTTTTCCCTCCCAAGCTTGAACATGTCAAAAACAGTCTTGAAGAGCTTCTTCAAGCTGATGATTCTGATGCTGGAGGGTGTAATCTTAGGGTGATCACAACCTCATTGAATGCATATTCACTTCCTTTATCAACTTCACCTGAGAACGGGTCTCCTTCCGCACTGGATCTCCAGTTGAAGTCAAAGTCAAGTGATGTCCCTGCTTTTTCTGTATCTGAGAAGAAAGAATATCCTGTTGATCCATCCCTTCCAGACATCAAGAACAGCATATATTCAACTGATGAATTCCGGATGTATTCTTTCAAGGTTCGGCCTTGCTCTCGTGCTTATTCACATGATTGGACAGAGTGCCCTTTTGTTCATCCAGGGGAGAATGCTCGTAGAAGGGACCCCAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTTCGTAAGGGTGCTTGCCGGCGAGGAGATATGTGTGAATATGCTCATGGGGTATTTGAGTGCTGGCTGCATCCAGCACAGTATCGAACTCGTCTCTGCAAGGATGGGACAAATTGCTCCAGAAGAATTTGCTTCTTTGCTCATACTGCTGAAGAGCTTAGACCATTATATGTTTCAACTGGTTCTGCTGTTCCCTCTCCTCGAGCAAACGCATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCCCCTTCGTCGATGTCTGTGATGTCTCCTTCAGCATTCACTCCTCCTATGTCACCTTCTGCCAACGGCATTTCACACTCTTCTGTTGCTTGGCCTCAGCCAAACATCCCTGCATTGCATCTTCCAGGAAGTAATCTTCAGTCCAGTCGTCTGAGATCTTCACTCCATGCTAGAGATATTCCTTTTGATGATTTTGACATGTTATCTGATTATGATCAACAACAGCTGCTTAATGAGTTAGCATGCCTCTCTCCCCGGCCTATGAATTCTAACCCTCTAAATCGCTCCGGACGGATGAAACCCCTGACTCCTTCTAATCTTGATGAGCTCTTTTCTGCTGAGAGTTCTTCTCCTCGATATGCTGATCCAACACTGAATTCAGCTGTCTTTTCTCCAACTCACAAATCAGCTGTCTTTAATCAGTTTCAGCAGCAGCAAAGCATGTTGTCACCTGTGAATACAAATTTTTCTCCCAAAAATGCTGAGCATCCTTTTCTGCAGGCTTCTTTTGGGGTTCAGACGCCAGGCAGAATGTCTCCAAGGAATGTCGAACCTATTTCTCCAATGAGCTCTAGGATTTCTATGCTAGCTCAACATGAGAAACAACACCAGTTTCGTAGCCTAAGCTTCCGGGAACTTGGCTCCAACTCTGCTGCTGCAGCTGCTGCGCCCTCAGCCAATTCTTGGTCAAAATGGGACTCCCCCAATGGTAAGCTGGATTGGGCAGTCAGTGCAGATGAATTAGGTAAGCTTCGGAGATCATCTTCGTTTGAGCTTGGGAACAATGGCGAGGAGCCTGATTTATCATGGGTGCAGTCACTTGTTAAAGAATCTCCAAATGAGACTAAAGAGAAATCGTCAACTGCTGTCTCAAGTGTTGCAGCTGCTGGATCCTCCGGTGAGGGATCAAATATGAACACCCAAATGGAGTCCGTTGATCATGCTGTACTGGGAACATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2190 0.4635 MCCEFERLNPAPSLSLSPTLTRAVASRNYVMNHFTVDTGDSLVSLLELAANNDVEGFKRLIECDPSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSIDIMKLILAVSDVDINRPCGLDKSTALHCAASGGAVNAVEAVRLLLAAGADPNSVDANGHKPVDVIVFPPKLEHVKNSLEELLQADDSDAGGCNLRVITTSLNAYSLPLSTSPENGSPSALDLQLKSKSSDVPAFSVSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRICFFAHTAEELRPLYVSTGSAVPSPRANASSAMDFAAAMSMLPGSPSSMSVMSPSAFTPPMSPSANGISHSSVAWPQPNIPALHLPGSNLQSSRLRSSLHARDIPFDDFDMLSDYDQQQLLNELACLSPRPMNSNPLNRSGRMKPLTPSNLDELFSAESSSPRYADPTLNSAVFSPTHKSAVFNQFQQQQSMLSPVNTNFSPKNAEHPFLQASFGVQTPGRMSPRNVEPISPMSSRISMLAQHEKQHQFRSLSFRELGSNSAAAAAAPSANSWSKWDSPNGKLDWAVSADELGKLRRSSSFELGNNGEEPDLSWVQSLVKESPNETKEKSSTAVSSVAAAGSSGEGSNMNTQMESVDHAVLGTWLEQMQLDHLVAQQN* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1279 729 Gene3D - 302 364 - -
Lja1g1279 729 ProSiteProfiles Ankyrin repeat profile. 122 157 IPR002110 GO:0005515
Lja1g1279 729 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 31 726 - -
Lja1g1279 729 Pfam Ankyrin repeats (3 copies) 48 156 IPR002110 GO:0005515
Lja1g1279 729 MobiDBLite consensus disorder prediction 672 701 - -
Lja1g1279 729 ProSiteProfiles Zinc finger C3H1-type profile. 306 328 IPR000571 GO:0046872
Lja1g1279 729 SUPERFAMILY Ankyrin repeat 45 169 IPR036770 -
Lja1g1279 729 ProSiteProfiles Ankyrin repeat region circular profile. 122 156 - -
Lja1g1279 729 SMART ANK_2a 40 70 IPR002110 GO:0005515
Lja1g1279 729 SMART ANK_2a 122 154 IPR002110 GO:0005515
Lja1g1279 729 SMART ANK_2a 87 117 IPR002110 GO:0005515
Lja1g1279 729 SMART c3hfinal6 336 359 IPR000571 GO:0046872
Lja1g1279 729 SMART c3hfinal6 301 327 IPR000571 GO:0046872
Lja1g1279 729 MobiDBLite consensus disorder prediction 679 701 - -
Lja1g1279 729 PANTHER UNKEMPT FAMILY MEMBER 31 726 IPR045234 -
Lja1g1279 729 Gene3D - 42 181 IPR036770 -
Lja1g1279 729 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 326 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1279 Lja-Chr1 13181606 13185424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1279 11 722 C2H2 Transcription Factor Family AT5G12850 51.832 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja1g1279 Ank_2 1e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1279 - - ccaj:109796653 1185.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1279 1 13181606 13185424 Lja1g1279 1 13181606 13185424 ECH