Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1278 ATGGCACCTTCACAACCACGATCCAAACGAAACACCACCACGGAGAAGAAGAAAACGCAAGCAGACAAACGACGCGATCAGTTGTCGTTTTCCAAGCGGAAGAACGGGCTCTTCAACAAGGTCACCGAGCTCTCCATTCTCTGCCAATCGGAAACCGCGGTGATTGTAACCTCAAAGAACAACGACGGCGGTGAGATTTTCACGTGCGGCTACCCCTCTCCGGACGCCGTCATACAGCGGTTTCTCACTGGAGGGAAGGCGCGGCGGCGGGAGGAGGTGGGGGAGGAGAAGGTGGAAGCGCTTAGTTCTGAGTATGAGGCTGTGCAGGAACGGTTGAAAGAAGAGCAGAGGAAGCTGCAAGCGATAATGGAGGAGAAAGAGATGAAGGGTTCTGTGTTTCCTTCTTGGTGGGAAACCCTCATTGACGACATGGATTTGGATAGTGTTGAGCAGTTCAAGAATTCCATGGAGAATTTGAAGCTTAACCTGATTGCGCGCCAAAGATACTGTGAGATGATTCCTGGGCCGCCACAGATGATGGTGGCTCCGCCTCCTTCGCGGCCTCAGGCGATGGCTGCTCTGCCTCCGCCGCCATTGAAGAACTTGCCGCCGGTGGATGCCAAATTTGGAGTTTGGGTTCCATGCGGTCACAAAGTTTCTCCACCGCCACCATTGACGAGCTTGCCGCCGGTCATGGATGAGCCGGTGCACGATGCCAAATTTGGAGTTTGGGTTCCATGTGGTCAAAGAGTTACTACACGGGTCGTAGAATCGGACTTCGGAAGTGATAGTATTACTTTCATGATTCCTCCTATATGA 819 0.5287 MAPSQPRSKRNTTTEKKKTQADKRRDQLSFSKRKNGLFNKVTELSILCQSETAVIVTSKNNDGGEIFTCGYPSPDAVIQRFLTGGKARRREEVGEEKVEALSSEYEAVQERLKEEQRKLQAIMEEKEMKGSVFPSWWETLIDDMDLDSVEQFKNSMENLKLNLIARQRYCEMIPGPPQMMVAPPPSRPQAMAALPPPPLKNLPPVDAKFGVWVPCGHKVSPPPPLTSLPPVMDEPVHDAKFGVWVPCGQRVTTRVVESDFGSDSITFMIPPI* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1278 272 PANTHER MADS BOX PROTEIN 8 181 - -
Lja1g1278 272 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 61 IPR002100 GO:0003677|GO:0046983
Lja1g1278 272 MobiDBLite consensus disorder prediction 10 31 - -
Lja1g1278 272 SUPERFAMILY SRF-like 18 83 IPR036879 GO:0003677|GO:0046983
Lja1g1278 272 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Lja1g1278 272 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Lja1g1278 272 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 8 181 - -
Lja1g1278 272 Coils Coil 98 129 - -
Lja1g1278 272 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g1278 272 SMART madsneu2 14 72 IPR002100 GO:0003677|GO:0046983
Lja1g1278 272 Gene3D - 22 104 IPR036879 GO:0003677|GO:0046983
Lja1g1278 272 ProSiteProfiles MADS-box domain profile. 22 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1278 Lja-Chr1 13170264 13171360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1278 27 160 Type I MADS-box Gene Family AT5G60440 33.099 4.67e-19 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja1g1278 SRF-TF 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1278 - - lja:Lj0g3v0332129.1 322.398