Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1274 ATGTCTGGGGGAGATGCAAAGAAGGGAAGGAGAGTCATCATCATTGGTGTGTCAACCTTGCTATTGGTGGCTATGGTTGTGGCCGTCACGGTTGGCGTGAACCTCAATCACAATAAGAGTGAAGAGAACAACATGAAAAACTACAACCAGGTTTCTACCACGGTTAGAGCAGTCCAAACTCTTTGCCATCCCACTGATTACAAGAAGGAATGTGAGGAAACTCTTATAGCAGAAGCTGGAAACACCACAGACCCAAAAGAACTTATCAAAATTGCCTTCAACATTACAATCCAGAAAATTGGTGACAAACTCAAGGAAACTACTTTGTTGCATGAGATTGAAAAGGAGCCTAGAGCAAAGATGGCACTTGAGACATGCAAGCAACTTATGGATCTTTCAATTGAAGAGTTGACAAGGTCATTTGATGATATAGGCAAGTTTCAACTCCAGAATCTGGACAAAATCCTCATGAATGTAAAGGTTTGGCTTAGCGGTGCAGTCACATACCAAGATACATGTTTGGATGGATTTGAAAACACCACTAGCGAAGCTGGAATGAAGATGAAAGAGCTATTAACAACAAGCATGCACATGAGCAGCAATGCCCTTGCTATTGTCTCTCAACTTGCTGACGCAATATCAGATTTCAATGTCACAAAGTTAACTGGGCGTCGCCTCCTTCTTCAGAATTTTGAGACTCCATCATGGGTTGATCTTGATCATCGTAGACTCCTTGATGCAAAGAAAAACACACTCAAACACAAGCCTAATGTGACTGTAGCCATAGATGGGAGTGGAGATTTCAAGAGCATCAATGAGGCATTGAAGAAGGTTCCTCATCATAATAAAAAGCCATTTGTGATTTACATCAAGAAGGGCATTTACCAAGAGTATGTTGAAGTTAACAAGCATATGACTCATGTTGTCTTTGTTGGTGATGGTGGCAAAAAGACAAGAATCACAGGCAACAAAAACTTCATAGATGGAATTAACACCTACAGAACTGCAACTGTTGCTATCCAAGGAGATCATTTTGCTGCCATCAATATGGGTTTTGAGAACTCTGCTGGCCCTCACAAGCATCAAGCAGTGGCATTAAGGGTTCAAGCTGACAAGTCCATCTTCTACAATTGCTCAATGGATGGGTACCAAGATACACTCTATGCACACACCATGCGCCAATTCTACCGGGATTGCACCATTTCGGGTACCATTGACTTTGTCTTTGGTAATGGGCTAGTAGTTTTTCAGAACTGCACTTTTGTGGTCAGAAAGCCATTGGAAAACCAACAATGCATTGTAACAGCACAAGGCAGGAAAGAAAGACAGCAACCATCAGGAATAGTAATCCAAGGTGGTTCCATTGTGTCTGACCCTGAGTTCTTCCCAGTGAGGTTTGACAATAAGGCATATCTTGCTCGTCCATGGAAGAATTACTCTAGAACTATCATCATGGACACCTACATTGATGATTTGATTCATCATGATGGCTACTTGCCATGGCAAGGATTAGAAGGACCATCTGGCATGGACACTTGCTTCTATGCTGAGTACCACAACATAGGACCAGGTTCAGATAAATCAAAACGTGTACATTGGGCTGGAATCTGGAACCTCAATTCAAAAGCTGCACATTTGTTCTCCCCATCCAAGTTCTTCCACGGAGATGATTGGATTGAGGTTACTGGAATTCCCTATTTTACTGGCATTCCAGACCACCATAGGCACAAGAAAACATTACTTAATTGGTGA 1752 0.4212 MSGGDAKKGRRVIIIGVSTLLLVAMVVAVTVGVNLNHNKSEENNMKNYNQVSTTVRAVQTLCHPTDYKKECEETLIAEAGNTTDPKELIKIAFNITIQKIGDKLKETTLLHEIEKEPRAKMALETCKQLMDLSIEELTRSFDDIGKFQLQNLDKILMNVKVWLSGAVTYQDTCLDGFENTTSEAGMKMKELLTTSMHMSSNALAIVSQLADAISDFNVTKLTGRRLLLQNFETPSWVDLDHRRLLDAKKNTLKHKPNVTVAIDGSGDFKSINEALKKVPHHNKKPFVIYIKKGIYQEYVEVNKHMTHVVFVGDGGKKTRITGNKNFIDGINTYRTATVAIQGDHFAAINMGFENSAGPHKHQAVALRVQADKSIFYNCSMDGYQDTLYAHTMRQFYRDCTISGTIDFVFGNGLVVFQNCTFVVRKPLENQQCIVTAQGRKERQQPSGIVIQGGSIVSDPEFFPVRFDNKAYLARPWKNYSRTIIMDTYIDDLIHHDGYLPWQGLEGPSGMDTCFYAEYHNIGPGSDKSKRVHWAGIWNLNSKAAHLFSPSKFFHGDDWIEVTGIPYFTGIPDHHRHKKTLLNW* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1274 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 211 IPR035513 -
Lja1g1274 583 Pfam Plant invertase/pectin methylesterase inhibitor 57 205 IPR006501 GO:0004857
Lja1g1274 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 57 209 IPR035513 -
Lja1g1274 583 Gene3D - 251 570 IPR012334 -
Lja1g1274 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 51 209 IPR006501 GO:0004857
Lja1g1274 583 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Lja1g1274 583 SUPERFAMILY Pectin lyase-like 255 569 IPR011050 -
Lja1g1274 583 PANTHER PECTINESTERASE 10 571 - -
Lja1g1274 583 Pfam Pectinesterase 257 556 IPR000070 GO:0030599|GO:0042545
Lja1g1274 583 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Lja1g1274 583 CDD PMEI-like_3 60 210 - -
Lja1g1274 583 PANTHER PECTINESTERASE 10 571 - -
Lja1g1274 583 SMART PMEI_2 53 205 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1274 Lja-Chr1 13122228 13124370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1274 5 570 Carbohydrate Esterase AT3G05610 51.060 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1274 K01051 - gmx:100803527 974.156