Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1268 ATGGCTGATCCCTACTCCAATTTCTTCTCATCACCTGGTTTCTTCCACTTCAACCCCATCCACCACCACCACCACCATTTCCCATCTCCAAACCCATCTCCACACCACCCTCATGTCCACAACTTTTTCCACCACCACCACCAGATAACCACTGCTAATGCTTCTTCTTCTTCCTCTTCACCTCCTTCTCCTCCTCTAAGAGTGGAGCTCCCCCTCTTGGGCCTAAGTCCAGCAAAGCAAGAAGAATATAATGAAGAGCAAGAACAACAAGAAGATCACCTTTCCAAAGAGGAGGAGCTGGAAGAAGAAGATCAAGAAGATGGAACTGTCACTGTTGCACTCCACATAGGTTTACCAAGCCCTAGTGCTGCTGAAATTGCCTCTGTGATGTCCTCAAATTCTTCAGAGATCTCTGATAATCATAAAGATCATGTTATGGATGGTGAGGATGATTCTGGGCTCATGAGTACCAACAGGCTCAACAAGGGCCAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTGCAAAACATTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTATAGAAAAGGGCCTGAATCATTGAGGGGAAGCCAACCAACAGGAATGCTGAGACTTCCATGCTACTGTTGTTCTCCAGGGTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCTCTTAAAGATTTCAGAACCCTCCAAACACATTACAAGAGGAAGCATGGGATCAAACCCTTCATGTGCAGAAAGTGTGGCAAGGCTTTTGCTGTGAGGGGAGATTGGAGAACCCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATCTGTGGGTCTGATTTCAAGCACAAGAGGTCTCTAAAGGATCACATCAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATTGATGGCTTTGAAGAAGAGGATGAGCCAGCTTCTGAAGTAGAGCAAGATAATGATTCCACCCAGTAA 1026 0.462 MADPYSNFFSSPGFFHFNPIHHHHHHFPSPNPSPHHPHVHNFFHHHHQITTANASSSSSSPPSPPLRVELPLLGLSPAKQEEYNEEQEQQEDHLSKEEELEEEDQEDGTVTVALHIGLPSPSAAEIASVMSSNSSEISDNHKDHVMDGEDDSGLMSTNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGSQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDSTQ* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1268 341 SUPERFAMILY beta-beta-alpha zinc fingers 246 284 IPR036236 -
Lja1g1268 341 MobiDBLite consensus disorder prediction 50 108 - -
Lja1g1268 341 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 341 - -
Lja1g1268 341 SMART c2h2final6 264 284 IPR013087 -
Lja1g1268 341 SMART c2h2final6 180 202 IPR013087 -
Lja1g1268 341 Coils Coil 80 106 - -
Lja1g1268 341 Gene3D Classic Zinc Finger 179 202 - -
Lja1g1268 341 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Lja1g1268 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 284 IPR013087 -
Lja1g1268 341 Gene3D Classic Zinc Finger 241 318 - -
Lja1g1268 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Lja1g1268 341 PANTHER ZINC FINGER PROTEIN WIP2 1 341 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1268 Lja-Chr1 13056122 13058988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1268 1 338 C2H2 Transcription Factor Family AT3G57670 64.211 1.85e-146 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g1268 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1268 - - qsu:112003411 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1268 1 13056122 13058988 Lja1g1268 1 13056122 13058988 ECH
Lja1g1268 1 13056122 13058988 Lja3g2717 3 39803944 39807281 ECH