Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1263 ATGGAGACAGAAAACAGTGACATGAGGTCTAAGAAGATGGAAGACTATGAAGTTATAGAGCAAATTGGAAGAGGAGCATTTGGCTCTGCTTTTCTTGTTCTTCACAAGTCTGAGAAGAAAAGGTATGTGCTGAAAAAGATTCGTTTGGCTAAGCAGACAGAGAAGTTCAAACGTACAGCACACCAAGAGATGAACCTGATTGCAAAACTAAATAATCCTTATATTGTGGATTACAAAGATGCTTGGGTGGAGAAGGAGGACCGTATATGCATTGTAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGAACATAAAGAAAGCTCGAGGATCATTCTTTCCTGAGGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTGGACTACTTGCATTCTAATCGTGTAATCCATAGAGATCTAAAGTGCTCCAACATATTCCTCACCAAAGACAACAATATCCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTCAATGCAGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGATTCTCGCTGATATACCGTATGGTTATAAATCTGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGCTCATCAACCAGCATTTCGTGCTCCAGACATGGCAGGGCTTATCAACAAAATAAACAGATCCTCCATTTCTCCACTGCCAATTGTTTATTCTTCCACACTTAAACAAATCATCAAAAGCATGCTGAGGAAAAACCCTGAACACAGGCCAACAGCAGCTGAATTGTTAAGGCATCCACATTTACAACCTTATGTTCTCCGCTGTCAGAATGCATCATCTAATTTTCTTCCAATATATCCCATAGTTAACTCAAAGGATAAAACAAAAAAATCTTATAAAACTAGTGGTGGCAAGGACCATAGGGACAAAGAAGCAGGATTAGCATATCATCTGGAGCGCGTTCATCCAATTGAGGGAAATGGAGATGTACATACAAGCAATCCTCCTAACAATGGTGAGGTGACCGTATCAACCAGAACAGGAGACAACCTTGAGAACAAGATGGTTGATTTTACTAGCTACATAGGGGAATCTTCTACTAGTATCAGCGGCTCAAAAGACGGGTCAACAACTTCTGAATCATCTGTTTGCAGTATGTGCAAGGAGGATTTTAAAAGTAGACCTGCACAGGAAAAAGGTAACCATGGGAATGGGATCACTTCAAAATGTAGACAAGATTCTGTGCATGAAGAGCAAGCATTAGCTGCAGAACTTTTTCAGAAATTAGAATTGGTTGACTTAAACACGGGGATCTCAGAAGTTGAAGATGCTTTTTCCAAAGAAGGTTTCAATTTTGCTGAAGCACCGAGGGAAGATGCCAAATTTGAGGAATCCAGGAAATCAACAACATCCAATGCAAGCAGTAGCTGCACTGATAAAGATAAATCCATTAATGAGGAAAGGTCATCACTAATTGTGATTCCTGTTAAGGTTGAGCATGAAACTGAATCTAGAAACTCCTTGAAGAAAAGTGAAAACCCGGTTGCGTTTACAGAAGGCTCACATATGAACTGTTTGTCATCTGATTCTAGCAGTAAACTTCCAGTTAAGGATAACGAAACGGCGAAGGAGAACATCATTTGCACCACACAAAAAGATGAAAATTTAGTTGGTGTTGATCAGACACCAAGTGACACTACAATGGATGATGGTGATGAAACAATGAGGGATAGTCCCTGCCAGCAAAGAGCTGACGCTCTAGAATCTCTGCTTGAGTTGTGTGCTCAGCTACTTAAGCAAGATAAACTAGAAGAGCTTGCCGGTGTGCTAAAACCATTTGGAAAAGAAGCTGTCTCATCCAGAGAAACAGCAATATGGCTGACAAAGAGCCTCATGTCTGCCCAAAAGTTTAATTCTGAAACCTAG 1932 0.4094 METENSDMRSKKMEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVDYKDAWVEKEDRICIVTGYCEGGDMAENIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPEILADIPYGYKSDMWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVLRCQNASSNFLPIYPIVNSKDKTKKSYKTSGGKDHRDKEAGLAYHLERVHPIEGNGDVHTSNPPNNGEVTVSTRTGDNLENKMVDFTSYIGESSTSISGSKDGSTTSESSVCSMCKEDFKSRPAQEKGNHGNGITSKCRQDSVHEEQALAAELFQKLELVDLNTGISEVEDAFSKEGFNFAEAPREDAKFEESRKSTTSNASSSCTDKDKSINEERSSLIVIPVKVEHETESRNSLKKSENPVAFTEGSHMNCLSSDSSSKLPVKDNETAKENIICTTQKDENLVGVDQTPSDTTMDDGDETMRDSPCQQRADALESLLELCAQLLKQDKLEELAGVLKPFGKEAVSSRETAIWLTKSLMSAQKFNSET* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1263 643 MobiDBLite consensus disorder prediction 332 352 - -
Lja1g1263 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Lja1g1263 643 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 10 488 - -
Lja1g1263 643 Gene3D Transferase(Phosphotransferase) domain 1 98 319 - -
Lja1g1263 643 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 494 626 - -
Lja1g1263 643 MobiDBLite consensus disorder prediction 458 485 - -
Lja1g1263 643 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1263 643 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1263 643 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 494 626 - -
Lja1g1263 643 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 10 488 - -
Lja1g1263 643 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Lja1g1263 643 MobiDBLite consensus disorder prediction 327 352 - -
Lja1g1263 643 MobiDBLite consensus disorder prediction 559 580 - -
Lja1g1263 643 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1263 643 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Lja1g1263 643 SUPERFAMILY Protein kinase-like (PK-like) 13 301 IPR011009 -
Lja1g1263 643 CDD STKc_Nek 15 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1263 Lja-Chr1 13009693 13014703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1263 9 271 MAP Kinase Kinase Kinase AT3G13530 32.075 4.88e-37 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lja1g1263 Pkinase 1.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1263 K08857 - gmx:100793379 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1263 1 13009693 13014703 Lja1g1263 1 13009693 13014703 ECH
Lja1g1263 1 13009693 13014703 Lja5g2249 5 38462549 38478788 PCT