Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1262 ATGGCGAAGAAGAACAAAGCTAGGTTTTCCGACGACGAAGAAGAAATCGAGGCTCAAAATGAAACAAGCCTCTACCAGGTTCTTGGTGTGGAGAGAACAGCGACTCAGCAGGAAATCAAGAAGGCGTACCACAAGTTAGCTTTGCGTCTTCATCCTGATAAGAACCCTGATGATCAGGAAGCTAAAGAGAAATTCCAGCAGCTGCAGAAAGTTATCTCGATTCTCGGGGATGAAGAGAAACGGGCCGTGTATGATCAAACTGGCTGTGTTGATGATGCTGATCTTGCTGGAGATGTTGTTCAGAATCTTCATGACTTTTTCAGAACAATGTACAAGAAGGTCACTGAGGCTGATATTGAGGAGTTTGAAGCTAATTATAGGGGATCTGACTCGGAGAAAAAAGATTTGATTGACCTATACAAGGAGTGCAAGGGTAAAATGAACAAGCTTTTCTGTTCGATGCTTTGTTCAGATTCTAAACTTGACTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTGCTGGAGAACTAAAGGCAACAAAAGCATATGAGAAATGGGCTAAAGAAGTATCTGAAACCAAACCACCTACAAATCCTTTAAGGAGGGGGAATAAGTCAAGTAAGCAGTCTGAAACAGACCTGCATGCAATCATAGCACAACGCCGAAACGAGAGGAAAGGCCAGTTTGATTCAATGTTTTCAACTCTAGCTTCGAAATATGGTGGAGGTGATATGCAAGAACCTTCTGAAGAGGAATTCCAAGCTGCACAAATGAAGCTGGGGAGTGGAAGATCCTCCAAAAAAGCAAAGCAATCAAAGCGGAAGTAA 834 0.4281 MAKKNKARFSDDEEEIEAQNETSLYQVLGVERTATQQEIKKAYHKLALRLHPDKNPDDQEAKEKFQQLQKVISILGDEEKRAVYDQTGCVDDADLAGDVVQNLHDFFRTMYKKVTEADIEEFEANYRGSDSEKKDLIDLYKECKGKMNKLFCSMLCSDSKLDSHRFKDILDEAIAAGELKATKAYEKWAKEVSETKPPTNPLRRGNKSSKQSETDLHAIIAQRRNERKGQFDSMFSTLASKYGGGDMQEPSEEEFQAAQMKLGSGRSSKKAKQSKRK* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1262 277 MobiDBLite consensus disorder prediction 199 214 - -
Lja1g1262 277 Pfam DnaJ domain 24 85 IPR001623 -
Lja1g1262 277 MobiDBLite consensus disorder prediction 190 214 - -
Lja1g1262 277 PRINTS DnaJ domain signature 25 43 IPR001623 -
Lja1g1262 277 PRINTS DnaJ domain signature 43 58 IPR001623 -
Lja1g1262 277 PRINTS DnaJ domain signature 60 80 IPR001623 -
Lja1g1262 277 PRINTS DnaJ domain signature 80 99 IPR001623 -
Lja1g1262 277 CDD DnaJ 25 77 IPR001623 -
Lja1g1262 277 SUPERFAMILY Chaperone J-domain 20 109 IPR036869 -
Lja1g1262 277 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 273 - -
Lja1g1262 277 MobiDBLite consensus disorder prediction 239 277 - -
Lja1g1262 277 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 3 273 IPR042977 -
Lja1g1262 277 Gene3D DnaJ domain 7 98 IPR036869 -
Lja1g1262 277 SMART dnaj_3 22 80 IPR001623 -
Lja1g1262 277 ProSiteProfiles dnaJ domain profile. 23 88 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1262 Lja-Chr1 12997411 13000370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1262 25 85 C2H2 Transcription Factor Family AT1G74250 37.879 6.32e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1262 K09529 - gmx:100793909 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1262 1 12997411 13000370 Lja1g1262 1 12997411 13000370 ECH
Lja1g1262 1 12997411 13000370 Lja5g2251 5 38661521 38664030 PCT