Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1261 ATGGAATCTCATGATGAGACAGGATGCCAGGCTCCAGAGCGTCCTATTCTCTGCGTCAATAATTGTGGTTTCTTTGGAAGGGCGGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTATTGAAGCAGGAGCAGGACAAGCTTGCAGCAACATCGGTTGAAAATATTGTGAACAGCTGTTCCAATGGCAATGGAAAGCAGGCCATCACTGCAGATGCTGTTAATGTACGAGTTGAACCTGTGGAGGTCAAGGCAGTCACTGCTCAGATTTCTGCGGATTCATCCTCCGGTGAGAGCTTGGAGGTGAAAGCCAAGACTGGTCCCAGCAGATGTGGCACTTGCCGGAAACGTGTTGGGTTAACTGGTTTCAGCTGCAAATGTGGCAATGTCTTCTGCGCAATGCATCGCTATTCGGATAAACATGATTGCCCTTTTGATTATAGGGCTGTTGGTCAGGAGGCCATAGCGAAAGCCAACCCGGTCATTAAGGCAGATAAGCTTGATAAAATCTAG 519 0.4798 MESHDETGCQAPERPILCVNNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAATSVENIVNSCSNGNGKQAITADAVNVRVEPVEVKAVTAQISADSSSGESLEVKAKTGPSRCGTCRKRVGLTGFSCKCGNVFCAMHRYSDKHDCPFDYRAVGQEAIAKANPVIKADKLDKI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1261 172 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 2 172 - -
Lja1g1261 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Lja1g1261 172 Gene3D - 1 64 - -
Lja1g1261 172 SUPERFAMILY AN1-like Zinc finger 104 167 IPR035896 -
Lja1g1261 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Lja1g1261 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Lja1g1261 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Lja1g1261 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Lja1g1261 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Lja1g1261 172 Gene3D - 87 168 IPR035896 -
Lja1g1261 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 172 - -
Lja1g1261 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1261 Lja-Chr1 12984991 12987530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1261 5 172 C2H2 Transcription Factor Family AT3G52800 42.045 3.06e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1261 - - gmx:100499995 314.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1261 1 12984991 12987530 Lja1g1261 1 12984991 12987530 ECH
Lja1g1261 1 12984991 12987530 Lja3g0638 3 6411137 6414898 ECH