Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1259 ATGGCTACATTCTGTACATACATGTTTCTTCTCTCTGTGACCTTTCTTCCACTCTTCAACCTCACTTCATCTTCATCAGAGGGAGATATGAATATCCTTCTCTCCTTCAAGTCCTCCATTGAAGACTCTAAGAATGCATTGTCAACCTGGTCCAACACTTCATCAAACCACCACTGTAACTGGACTGGAATATCCTGTTCCACCACCACACCTTCACCACTCTCAGTAACTTCTATCAATCTTCAGGGGTTAAACCTTTCTGGGGATATCTCATCTTCTATATGTGACCTTCCAAATCTTTCTTATCTCGACCTTGCTGATAACATCTTCAACCAGCCCATCCCTCTTCACCTCTCTCAGTGCAGTTCTCTGGAAACTTTGAATCTCAGCACCAATCTCATATGGGGCACTATCCCATCTCAGATTTCTCAGTTTGGTTCATTGAAAGTGCTTGACTTGAGCAGAAACCATATAGAGGGAAACATCCCTGAAAGCTTAGGCTCCTTGAAGAATCTCCAAGTTCTTAACATGGGTAGTAACTTGCTCTCAGGTAATGTACCTGCTGTGTTTGGCAATATGTCTAAGCTAGAGGTACTTGATTTGTCTCAAAATCCTTACTTAGTGAGTGAGATTCCAGAGGATATTGGTGAGCTTCAAAATCTGAAGCAGCTTCTGTTGCAAAGCTCTTCTTTTCAAGGTGAAATTCCAAAATCTTTGGAGGGTTTGCTTAGTCTGACCCATTTAGATCTCTCTGAGAATAATCTAACAGGTGGGGTTCCTCTGGCTCTTGCATCTTCTCTCAAGAACCTGGTTTCTTTTGATATTTCACAAAACAGGCTTTTGGGGTCATTTCCAAATGGTATATGTAAAGGACAAGGCCTTGTTTATCTCAGCCTTCATACAAATAGCTTCACTGGCTCAATACCAAACTCCATTGGTGAGTGTAAGAGTCTTGAGAGATTCCAAGTTCAGGACAATGGTTTCTCTGGAGACTTCCCTATTGTGTTATGGTCATTACCCAAAATCAAGCTCATTAGAGCTGAAAACAATAGATTCTCAGGACAAATTCCTGAGTCAATATCAGGAGCTGTTCAGTTAGAGCAAGTTCAGCTTGACAATAACAGTTTTTCTGGTAAAATTCCTCAAGCTCTTGGCACTGTCAAGAGCTTGTACAGATTCTCTGCTTCTCTCAACCGTTTCTATGGTGAACTTCCTCCAAATTTTTGTGACTCCCCTGTCATGAGCATAGTGAATCTCTCTCACAACTCTCTTTCTGGTAAAATTCCAGAGCTGAAAAAATGCAGGAAGCTAGTTTCATTTTCTCTGGCTGACAACAGTTTCACAGGAGAAATACCCTCTTCCCTGGCTGAGCTACCAGTGCTGACTTACCTTGACCTTTCAGACAACAATCTAACTGGCTCAATCCCACAAGAGCTTCAAAACCTGAAGCTTGCTCTTTTCAATGTGTCCTTCAATCAGCTATCAGGTAAAGTACCATCCTCCTTGATTTCTGGTCTTCCTGCCTCATTTTTGGAAGGAAACCCTGGTCTTTGTGGCCCTGGGTTGCCCAAATCCTGTTTTGAAGACATGCCAAGACACAATAATGGTGCTCTTACAACCTTAACATGTGCTCTTATCTCCTTGGCCTTTATTGCTGCAACTGCAACTGTTGCTGGTGGATTTTTCATGTATAGGAGATCTTGCAAGGGGAATCAAGTTGGGGCTTGGAGGTCAGTGTTCTTCTATCCTCTTAGAATTACTGAGCATGATCTCCTTATAGGAATGAATGAGAAAAGCTCAATGGGAAATGGTGGAGTTTTTGGCAAGGTTTATGCTGTGAATTTACCTAGTGGTGAACTAGTATCTGTGAAGAAGCTAGTTAACTTTGGAAACCAGTCCTCTAAAAGTTTGAAAGCTGAGGTGAAGACCTTGGCGAAAATTAGGCATAAGAATGTAGTTAAGATTCTTGGGTTCTGCCATTCTGATGAGTCAATTTTGCTCATTTATGAGTACTTGCATGGAGGAAGCTTAGGGGATTTGATTTCCCATCAGAATTTTCAGTTGCCTTGGGGAGTTCGATTGAGGATTGCCATTGGTGTTGCTCAAGGACTGGCCTATCTTCACGAGGATTATGTCCCTCACTTGCTTCACAGAAATTTCAAGTCAAGGAACATTTTGTTGGATGCAAATTTTGAGCCAAAATTGACAGATTTTGCTCTTGATAGAATCCTGGGAGAAGCTGCATTTCAATCAACTTTGGATTATGGAGCAGCATCTTCTTGTTACATTGCACCAGAATATAGTTACAGTAAGAAAGCAAGTGAACAATTGGACGTGTACAGTTTTGGTGTTGTATTGCTAGAGCTAGTGAGTGGGAGGCAAGCAGAAGAAACAGAGTCAAGTGACTCCCTTGACATTGTGAAGTGGGTTAGAAGGAAAGTGAACATCACCAATGGAGTACACCAAGTTCTTGACCCAAGAATATCACATGCTTGTCACCAAGAAATGGTTGGAGCTTTAGATATTGCTCTTCGTTGCACTTCTGTGGTACCTGAGAAAAGACCATCTATGGTTGAAGTTGTTAGAGGTCTTCAGTCCCTTGAGTCCAGGACTTGCATTGCAAATTTGCAGGATACAAATGAGGAGTCCTCCCTTCCAGTCTGA 2664 0.4193 MATFCTYMFLLSVTFLPLFNLTSSSSEGDMNILLSFKSSIEDSKNALSTWSNTSSNHHCNWTGISCSTTTPSPLSVTSINLQGLNLSGDISSSICDLPNLSYLDLADNIFNQPIPLHLSQCSSLETLNLSTNLIWGTIPSQISQFGSLKVLDLSRNHIEGNIPESLGSLKNLQVLNMGSNLLSGNVPAVFGNMSKLEVLDLSQNPYLVSEIPEDIGELQNLKQLLLQSSSFQGEIPKSLEGLLSLTHLDLSENNLTGGVPLALASSLKNLVSFDISQNRLLGSFPNGICKGQGLVYLSLHTNSFTGSIPNSIGECKSLERFQVQDNGFSGDFPIVLWSLPKIKLIRAENNRFSGQIPESISGAVQLEQVQLDNNSFSGKIPQALGTVKSLYRFSASLNRFYGELPPNFCDSPVMSIVNLSHNSLSGKIPELKKCRKLVSFSLADNSFTGEIPSSLAELPVLTYLDLSDNNLTGSIPQELQNLKLALFNVSFNQLSGKVPSSLISGLPASFLEGNPGLCGPGLPKSCFEDMPRHNNGALTTLTCALISLAFIAATATVAGGFFMYRRSCKGNQVGAWRSVFFYPLRITEHDLLIGMNEKSSMGNGGVFGKVYAVNLPSGELVSVKKLVNFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESILLIYEYLHGGSLGDLISHQNFQLPWGVRLRIAIGVAQGLAYLHEDYVPHLLHRNFKSRNILLDANFEPKLTDFALDRILGEAAFQSTLDYGAASSCYIAPEYSYSKKASEQLDVYSFGVVLLELVSGRQAEETESSDSLDIVKWVRRKVNITNGVHQVLDPRISHACHQEMVGALDIALRCTSVVPEKRPSMVEVVRGLQSLESRTCIANLQDTNEESSLPV* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1259 887 Gene3D Transferase(Phosphotransferase) domain 1 672 884 - -
Lja1g1259 887 ProSiteProfiles Leucine-rich repeat profile. 460 483 IPR001611 GO:0005515
Lja1g1259 887 Gene3D Phosphorylase Kinase; domain 1 590 671 - -
Lja1g1259 887 Pfam Protein tyrosine and serine/threonine kinase 601 862 IPR001245 GO:0004672|GO:0006468
Lja1g1259 887 SUPERFAMILY L domain-like 210 522 - -
Lja1g1259 887 SUPERFAMILY Protein kinase-like (PK-like) 604 863 IPR011009 -
Lja1g1259 887 Gene3D Ribonuclease Inhibitor 265 529 IPR032675 -
Lja1g1259 887 PRINTS Leucine-rich repeat signature 458 471 - -
Lja1g1259 887 PRINTS Leucine-rich repeat signature 245 258 - -
Lja1g1259 887 CDD STKc_IRAK 601 867 - -
Lja1g1259 887 Gene3D Ribonuclease Inhibitor 26 207 IPR032675 -
Lja1g1259 887 ProSiteProfiles Protein kinase domain profile. 596 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1259 887 PANTHER OSJNBB0022F23.6 PROTEIN 6 875 - -
Lja1g1259 887 Gene3D Ribonuclease Inhibitor 208 264 IPR032675 -
Lja1g1259 887 ProSiteProfiles Leucine-rich repeat profile. 147 170 IPR001611 GO:0005515
Lja1g1259 887 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 875 - -
Lja1g1259 887 SMART LRR_typ_2 242 265 IPR003591 -
Lja1g1259 887 SMART LRR_typ_2 458 481 IPR003591 -
Lja1g1259 887 SMART LRR_typ_2 145 168 IPR003591 -
Lja1g1259 887 SMART LRR_typ_2 267 291 IPR003591 -
Lja1g1259 887 SMART LRR_typ_2 169 192 IPR003591 -
Lja1g1259 887 SMART LRR_typ_2 97 121 IPR003591 -
Lja1g1259 887 SMART LRR_typ_2 193 218 IPR003591 -
Lja1g1259 887 SUPERFAMILY L domain-like 26 289 - -
Lja1g1259 887 Pfam Leucine Rich Repeat 461 482 IPR001611 GO:0005515
Lja1g1259 887 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Lja1g1259 887 Pfam Leucine rich repeat 147 205 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1259 Lja-Chr1 12964314 12968346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1259 33 867 Receptor kinase-like Gene Family AT5G06940 64.524 0.0 1058
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja1g1259 PK_Tyr_Ser-Thr 7.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1259 - - gmx:100794428 1509.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1259 1 12964314 12968346 Lja1g1259 1 12964314 12968346 ECH