Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1258 ATGGAAATAGCAAAGACGGTGTGGATTAGCAAGGCCGGTGGTGCGAGCGGTGTTCGTGAACAAAGGGTTTTAGGGTTTCAATGTGATGAATCATTCAAACATGCACTTGATGCTACCGTCCAGGTTCCGTGGAAGAATGGAGGAATCAAAGCGGCGGAGGACGGAGGAAGGACTGTGAATACTGAGAGTAACACGTCTGGTCTCAGTTTTGATGGTGAAGACCAAAAGCCTGATGGGAATGTTGGGAAGAGGAAATTTCTCATGCTGATAGCTCAGCTATGTGAGTGTTTGAGAGAGTGGAACATCACCTCTGTGCAGAATATGCTCAACATTTGTGCTATGGAACTGGATCAATTTTGGAGACTCCTGATGAGATGCCTAAAGGAGGAACACTTCACAGTTCACACAGTTAGCTTGCTGATGCAGGACAAGCTGGTAGATGCTGGAAAGCGAGGTGACGGAGTTGAGGTGACTGGTATTTGTAGGGCTATGAGTGTCAGGGGCCAACTCAGAATTGTCAAGTCATTATTCAAGATATATATTGATTGTCTTCACATAAAGAAGTCCGTTGAGTCCAGGATGCTGATAGGGGATACTATGGAGGTTGACAATCCCCAGGGAAAAAATGCAGAAGTTGCCTTTGATGAAGAAAAGGTTCTTGAGAGTGGTGCCCTAGTTTTGAGTGATCGTGGTATCTGCTATATAGATGAATTCGGTAGAATGTCTGACAATGCCAGGAGCATGTTACAAGAGGTTATGCAACAACAAACCGTTTCAATAGCAAAGGCAGACATTATTGCTTCTCTTAACTTCGATGTTGGCTTGTGCAAATCCAAGGTCAATCGTGAGCAACGCTTAGCTATCCATCTGAGAATGGCTTGGATAGAAGCAGAACCAAGCTGTGGGTACGTACCCGTACCGGAGTACGTATTGACCAAGCTGTGGGTACATGAATTCTCAAGGTGCATGAACAATAAACAAGAACAACAATTTATGGGAAGTTCCGGTGGAGGATTTTGA 1020 0.448 MEIAKTVWISKAGGASGVREQRVLGFQCDESFKHALDATVQVPWKNGGIKAAEDGGRTVNTESNTSGLSFDGEDQKPDGNVGKRKFLMLIAQLCECLREWNITSVQNMLNICAMELDQFWRLLMRCLKEEHFTVHTVSLLMQDKLVDAGKRGDGVEVTGICRAMSVRGQLRIVKSLFKIYIDCLHIKKSVESRMLIGDTMEVDNPQGKNAEVAFDEEKVLESGALVLSDRGICYIDEFGRMSDNARSMLQEVMQQQTVSIAKADIIASLNFDVGLCKSKVNREQRLAIHLRMAWIEAEPSCGYVPVPEYVLTKLWVHEFSRCMNNKQEQQFMGSSGGGF* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1258 339 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 133 199 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja1g1258 339 MobiDBLite consensus disorder prediction 51 76 - -
Lja1g1258 339 MobiDBLite consensus disorder prediction 57 71 - -
Lja1g1258 339 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 217 270 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja1g1258 339 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 133 199 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Lja1g1258 339 Gene3D - 125 187 IPR012340 -
Lja1g1258 339 SMART mcm 93 335 IPR031327 GO:0003677|GO:0005524|GO:0032508
Lja1g1258 339 Pfam MCM P-loop domain 216 270 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g1258 339 PRINTS Mini-chromosome maintenance (MCM) protein family signature 251 264 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g1258 339 PRINTS Mini-chromosome maintenance (MCM) protein family signature 223 237 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g1258 339 ProSiteProfiles MCM family domain profile. 217 270 IPR001208 GO:0003677|GO:0005524|GO:0032508
Lja1g1258 339 Gene3D - 188 276 IPR027417 -
Lja1g1258 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 274 IPR027417 -
Lja1g1258 339 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 217 270 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1258 Lja-Chr1 12948102 12960143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1258 207 270 Core DNA Replication Machinery Family AT2G16440 76.119 3.72e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1258 K02212 - gmx:100782586 112.849