Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1257 ATGCCTCCACCACAACATGGAGGTTCTTCCCAAGACGAGATCTTGAGCATTGCAATGGAGGCAATAAGAGAAGAGGAAAAACGTGTAGAGGAATGCCTCAATCGAACCCCGGGCAACCGGAATCAGAGGGAACTAAATTACCATGGTGACAACGATAGCTCTAAGTTTCGTGGAGTTTCCAAGTGCCATGCTCTGCGTTACGAAGCATTTACATGGGATGATACAATTCCAGGAGAGGAACGAAGAACAGTTTATATTGGTGGATATTCGACTGGAGCTGAAGCTGCCAGAGCTCATGACAAAGTTTCAATTAAGATAAAAGGCAGCAATACATTAACAAATTTCCCTTTGAATGACTATCGGGCGGATATCTTGCAAATGCAAGAAATGAGCAAAAGATTTTATATTGAGCATGTTGCTAGAAGGAGTAGCTGGGCCAGTAGTCAAACCACTTCCCCTTACCGTGGTGTCTACAGAAACAGAGTTCCAGAGTGCAATAGTTGGAAAGCAGGTCTTGGCCAAAGGATTAGAAGGATAGATCTTGGCACATATCATAGTCCTGAGGATGCAGCTAGAGCCTATGATATTGCTCTAATAGCATTGAAGGGAAAGGCTGCAGTCACACATTTTGATGTAGACTCTTATGAGATCAATGGCATCTCAAATTCAAGGTCTAAACTAATAGGGGAATGGAAAATATCTGTTTGGAGTAGTGGAATCAGCAATGCTCATACAACACATCCTAGCAGCTTCCAACACCAGCACAGTCCTCAGCAATTGGGAGCCTCATCCTCTAATCATATCCTAAATAACCGCAATCTTCAGCAGCTCGTGACTCGGCAACTGGGTAGTGGAATAAACAATGCTGGCAGATCCCAATACCATCACAATCCTCAGCAATTGGGAACCTCATCCACTAATCTCATCCGAGAACAACACAATCATCAGCAGCTCCTAACTCAGCAACTGAGGAGTGGAATAAACAATGTTGATACATCACATCTTAGCAGCTCCCAATACCAACACAAGCCTCGGAGCTTGGGAACCTCATCCTCTAATCCCAGCCCAAATGAGCCCAATCTTCAAGAGCTCCTGACTCAACTAGGGAGTGGAATAAACAATGCTGATTCAACACATCCTAGCAGCTCTCAATACCAACATAATCCTCGGAACCTGGGAATCTCATCCTCTAGTCTCATCCAAAATCAACTCAATCCTCAGCAACTCCTGACTCAGCAACTAAGGAGTGGAGTAAGCAATGTTGATACATCACATCCTAGAAGCTCCCAATACCAGCACAATCCTCAGAGTCTGGGAACCCCATCCTCTAATCCAATCCCAAATCAACACAATCCTCATCAGCTCATGACTGTGCAATTGGGGTGTGGAATAAACAATGCTAATACAGCACGTCCTAGCAGCTCTCAATACCAACACAATCCTCAGCGAGTGGGGTCCTCATCGTCTGATCTCATCCCAAATCAACACAATCCCCAACAGCTCCTGACTCAGCAACTGGGGAGTGGAATGAGCAATGCAAATACAACTCATCCTAGCAGCTCTCAATACCAACACAATCCTCAGCAACTGGGAAGCTCATCCACTAATTTCATCCCAAATCAATACAATCCCCGACAGCTCCTGACTCAGCAACTGGGGAGTGGAATGAACAATGCTGATACAACTCATCCTAGCAGCTCTCAATACCAGCACAATCCTCAGCAAGTGGGAACCTCAGCCTCTAATTTCATCCCAAATCAACACAATCCCCAGCAGCTCCTGACTCATCAACTGGGGAGTGGAATGAACAATGCTGCGACAACACTTCCTAACAGCTCACAATACCAACACAATCCTCAGCAACTGGGAAGCTCATCCTCTAGTGTCATCCCAAATCAACAGAATCCTCAGCAGCTTCTGACTCAACAACGGGGCAAGGGAATAAACAATGCTGATGCAACTCATCCTAGCAGCTCTCAATACCAACACAATCCTCAGCAAGTGGGAACCTCAGCCTCTTATTTCATCCTAAATCAACACAATCCCCAGCAGCTCCTGACTCATCAACTGGGGAGTGGAATGAACAATGCTGATACAACACTTCCTAACAGCTCACAATACCAACACAATCCTCAGCAACTGGGAAGCTCATCCTCTAGTGTCATCCCAAATACACACAATCCTCAACAGCTCCTGACTCAACAACTGGGCAATGAACCTTCCAACAACAATCCCAATACTTTGAACAACCCATGTCAGAACTTAAACTCCAGCTTCTCTAATAGTCTTCAAAATTATTGTTCGCAACTAAACACTGGTGCTCAAGTTGCAATGCCTGAAGATGTTTCTGACATAAATCAGTACCTCAACATGGATTACGTGGAAGAGTATGATCGCACTTGTGGAATTGGCCAATGGAGGCCGATAAGGCCTTGA 2436 0.4511 MPPPQHGGSSQDEILSIAMEAIREEEKRVEECLNRTPGNRNQRELNYHGDNDSSKFRGVSKCHALRYEAFTWDDTIPGEERRTVYIGGYSTGAEAARAHDKVSIKIKGSNTLTNFPLNDYRADILQMQEMSKRFYIEHVARRSSWASSQTTSPYRGVYRNRVPECNSWKAGLGQRIRRIDLGTYHSPEDAARAYDIALIALKGKAAVTHFDVDSYEINGISNSRSKLIGEWKISVWSSGISNAHTTHPSSFQHQHSPQQLGASSSNHILNNRNLQQLVTRQLGSGINNAGRSQYHHNPQQLGTSSTNLIREQHNHQQLLTQQLRSGINNVDTSHLSSSQYQHKPRSLGTSSSNPSPNEPNLQELLTQLGSGINNADSTHPSSSQYQHNPRNLGISSSSLIQNQLNPQQLLTQQLRSGVSNVDTSHPRSSQYQHNPQSLGTPSSNPIPNQHNPHQLMTVQLGCGINNANTARPSSSQYQHNPQRVGSSSSDLIPNQHNPQQLLTQQLGSGMSNANTTHPSSSQYQHNPQQLGSSSTNFIPNQYNPRQLLTQQLGSGMNNADTTHPSSSQYQHNPQQVGTSASNFIPNQHNPQQLLTHQLGSGMNNAATTLPNSSQYQHNPQQLGSSSSSVIPNQQNPQQLLTQQRGKGINNADATHPSSSQYQHNPQQVGTSASYFILNQHNPQQLLTHQLGSGMNNADTTLPNSSQYQHNPQQLGSSSSSVIPNTHNPQQLLTQQLGNEPSNNNPNTLNNPCQNLNSSFSNSLQNYCSQLNTGAQVAMPEDVSDINQYLNMDYVEEYDRTCGIGQWRPIRP* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1257 811 MobiDBLite consensus disorder prediction 648 667 - -
Lja1g1257 811 MobiDBLite consensus disorder prediction 601 633 - -
Lja1g1257 811 SMART rav1_2 55 122 IPR001471 GO:0003700|GO:0006355
Lja1g1257 811 SMART rav1_2 153 217 IPR001471 GO:0003700|GO:0006355
Lja1g1257 811 SUPERFAMILY DNA-binding domain 152 212 IPR016177 GO:0003677
Lja1g1257 811 SUPERFAMILY DNA-binding domain 54 117 IPR016177 GO:0003677
Lja1g1257 811 MobiDBLite consensus disorder prediction 508 540 - -
Lja1g1257 811 MobiDBLite consensus disorder prediction 246 265 - -
Lja1g1257 811 ProSiteProfiles AP2/ERF domain profile. 153 211 IPR001471 GO:0003700|GO:0006355
Lja1g1257 811 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 254 - -
Lja1g1257 811 MobiDBLite consensus disorder prediction 689 755 - -
Lja1g1257 811 ProSiteProfiles AP2/ERF domain profile. 55 116 IPR001471 GO:0003700|GO:0006355
Lja1g1257 811 CDD AP2 54 116 IPR001471 GO:0003700|GO:0006355
Lja1g1257 811 Coils Coil 15 35 - -
Lja1g1257 811 CDD AP2 154 213 IPR001471 GO:0003700|GO:0006355
Lja1g1257 811 MobiDBLite consensus disorder prediction 415 495 - -
Lja1g1257 811 MobiDBLite consensus disorder prediction 330 394 - -
Lja1g1257 811 Gene3D AP2/ERF domain 153 213 IPR036955 GO:0003700|GO:0006355
Lja1g1257 811 Gene3D AP2/ERF domain 54 118 IPR036955 GO:0003700|GO:0006355
Lja1g1257 811 MobiDBLite consensus disorder prediction 554 587 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1257 25 229 AP2-EREBP Transcription Factor Family AT5G17430 35.849 4.12e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1257 K09285 - lja:Lj1g3v4289070.1 696.427