Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1253 ATGGAGGAGCAATCTACAGTAGGGTTTCGCGGTTCAACTCCCGATGGCGGCCTTGTGCTTGAATCGATTCAATTCAACGACGAGATTCAGGGAATCGTGTCACCGGTACCGGCGCCGGAAAACGCGAGCTCGTTCACCGCGCTGCTTGAGCTACCACCGACGCAGGCCGTGGAGCTTCTTCACTCGCCCAACGTGAATCAGAAACCCTATCTACTAGGCTCTTTCAATGGCAATTTGACCTTCCCTTCCAACGCCGCGTTGATCGAACGCGCCGCGAAGTACTCCGTGTTTGCCGGAGAGAACAACAACTCGCCGCCGGTGAAGAACGAGCCGCAAGAGACCGATTCCAACCCGTGCTCGACTCAGGGGTACGTTTCGGATCCCGCCGTTGAGAACAAGAATCAGAGAAGCGCCGCCGCCAAGAGGAAGGAGCGAGAGAAGAAGGGTAGAGGTTCGTCGTCGAAGAAGAGTAAGAGCGTCGCCGATGAATCCTCCGGCGGTGACGGCGAGAAGCTTCCGTATGTCCATGTTCGCGTTCGGCGAGGTCAAGCCACAGATAGTCACAGTTTGGCAGAAAGAGCTAGGAGAGAGAAGATCAATGCGCGCATGAAGCTTTTACAAGAACTGGTCCCTGGTTGCGACAAGATATCTGGAACGGCATTGGTTCTGGATGAAATCATTAACCATGTGCAATCTTTGCAACGTCAAGTGGAGATCTTATCTATGAAACTGGCCGCAGTTAACCCAAGAATTGATTTCAACTTAGACAGCTTATTGACTGCTGATGGGGTATCTCTAATGGACAGTAACTTACCAAGCATGGTTACACCTCTCATGTGGCCAGAAAACCCACTCAACGGTAACAGACCGCATTATCAACAACAATGGCAATTCGATGCATTCCACCAACCACTTTGGGCGAGGGAGGAAGACAACCATAATTTCATGACTCCGGAAACCTCACTTTTGAGTTATGACTCGTCAGCAAATTCAGCATCTCTGCACTCAAACCAATTGAAGATGGAGCTATGA 1032 0.5107 MEEQSTVGFRGSTPDGGLVLESIQFNDEIQGIVSPVPAPENASSFTALLELPPTQAVELLHSPNVNQKPYLLGSFNGNLTFPSNAALIERAAKYSVFAGENNNSPPVKNEPQETDSNPCSTQGYVSDPAVENKNQRSAAAKRKEREKKGRGSSSKKSKSVADESSGGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFNLDSLLTADGVSLMDSNLPSMVTPLMWPENPLNGNRPHYQQQWQFDAFHQPLWAREEDNHNFMTPETSLLSYDSSANSASLHSNQLKMEL* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1253 343 Pfam Helix-loop-helix DNA-binding domain 187 234 IPR011598 GO:0046983
Lja1g1253 343 Gene3D - 180 253 IPR036638 GO:0046983
Lja1g1253 343 SMART finulus 189 239 IPR011598 GO:0046983
Lja1g1253 343 MobiDBLite consensus disorder prediction 102 133 - -
Lja1g1253 343 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 19 343 IPR024097 GO:0006355
Lja1g1253 343 Coils Coil 223 243 - -
Lja1g1253 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 252 IPR036638 GO:0046983
Lja1g1253 343 MobiDBLite consensus disorder prediction 136 165 - -
Lja1g1253 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 233 IPR011598 GO:0046983
Lja1g1253 343 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 19 343 - -
Lja1g1253 343 MobiDBLite consensus disorder prediction 102 174 - -
Lja1g1253 343 CDD bHLH_AtBPE_like 173 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1253 Lja-Chr1 12911703 12916716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1253 20 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.070 2.40e-102 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g1253 HLH 1.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1253 - - gmx:100814124 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1253 1 12911703 12916716 Lja1g1253 1 12911703 12916716 ECH
Lja1g1253 1 12911703 12916716 Lja5g2263 5 39176764 39182885 PCT