Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1251 ATGGATTCGAATTCCCGTTATCAACTCCAACCCAATTCTGGGTTCCTTCGATTTCGCTCTACCCTTAGCTCACCTCAGACGAATCTCAAACAAGGTGAAGGTGGTGCTGCTGCCAATAATGGCGGGGGCAACCAGTGGGGGGGTTTTGAACCAGAGAGGCTGGTTCCTCAATTCATGAATTCAGGTAACACTGAGAGGAGTCACAATTACTCTGAATTCGTGAATGAGAAACTTACTAATCATAATTCATCATCATCATCACCATCATCTCTCAGCAGAATGAATTTTCATCTTCTGAGACAGAGTAGCTCCCCTGCTGCACATTTCTCCAACATCATCTCCTTTCAGAATGGGCATGATACTACTAAAGGTGTTGGAAACTATGGTGGGGTGAATGACAGTGATGGTGAACAAAGTCTATCTATGAATAGATTGAATAACCAAATCAGCAATGGTGATACTCGTAATAGTGGCCTTAGATTCCCTTATGATTCATGGAATGAGACCTCATTCTTCTCAGATAAACACATTGACTCCAACAAAGAGAGAAATGGTGATGATAAGTTACTCTCTGATGCTCAGAATGGAGAGCTAGGAAATCAAGTTCACACACTGACTCATCACCTGAGTTTGCCTTTACCGAGAAAGTCATCACAGTTGTTTGCTATGGACAATTTGCTTGAGTTCACAGATTCTGTTCCTACCAATGTCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTAGGATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAATCTTGACAAGCAAACTAGCACTGCAGAAATGTTGGACTTGGCTGCAGTGTACATTAATGATCTTCAGAAACAATTCAAGACTCTAAGTGAAAAACGAGCTAAATGCAAATGTACAAGAATGCACACATCAGAATCAAATCAAATTGCTTGA 966 0.4151 MDSNSRYQLQPNSGFLRFRSTLSSPQTNLKQGEGGAAANNGGGNQWGGFEPERLVPQFMNSGNTERSHNYSEFVNEKLTNHNSSSSSPSSLSRMNFHLLRQSSSPAAHFSNIISFQNGHDTTKGVGNYGGVNDSDGEQSLSMNRLNNQISNGDTRNSGLRFPYDSWNETSFFSDKHIDSNKERNGDDKLLSDAQNGELGNQVHTLTHHLSLPLPRKSSQLFAMDNLLEFTDSVPTNVRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNLDKQTSTAEMLDLAAVYINDLQKQFKTLSEKRAKCKCTRMHTSESNQIA* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1251 321 PANTHER TRANSCRIPTION FACTOR BHLH130 54 152 - -
Lja1g1251 321 MobiDBLite consensus disorder prediction 24 45 - -
Lja1g1251 321 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 151 313 - -
Lja1g1251 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 246 310 IPR036638 GO:0046983
Lja1g1251 321 Gene3D - 245 316 IPR036638 GO:0046983
Lja1g1251 321 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 54 152 - -
Lja1g1251 321 PANTHER TRANSCRIPTION FACTOR BHLH130 151 313 - -
Lja1g1251 321 Pfam Helix-loop-helix DNA-binding domain 249 294 IPR011598 GO:0046983
Lja1g1251 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 293 IPR011598 GO:0046983
Lja1g1251 321 SMART finulus 249 299 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1251 Lja-Chr1 12881581 12885176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1251 98 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.611 1.66e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja1g1251 HLH 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1251 - - gmx:100796534 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1251 1 12881581 12885176 Lja1g1251 1 12881581 12885176 ECH
Lja1g1251 1 12881581 12885176 Lja3g0633 3 6337161 6341264 ECH
Lja1g1251 1 12881581 12885176 Lja3g2706 3 39183883 39187509 ECH
Lja1g1251 1 12881581 12885176 Lja5g2271 5 39627015 39630348 PCT