Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1239 ATGATGGCTTCCAGTGTCAAAAACAACACCAACCCCACAACCACTCAACTTCAACCACTCCCACCACCGCAGCAACACCGTCATCCCCACCACCTCTTTCAGCACCACCACCATCATCATCAAACACCAGAACATCAAATTTCATTCGGAATGATGCAACCTTCTTCATCATCCTCTGTCCCTGGGAACTACCTGCTAAGCAAGGATTCTGGAGCTTATGATTTGGGAGAATTGGATCAAGCCCTTTTTCTCTATCTTGATGGACAAGCTGGAGAGCCTTCAAGTGTTAATCAAGACCAACAAAGACAGAATAACTCATCATCATCAGGAATGAGGCCTCCAACTCTCAACATTTTCCCCTCTCAGCCTATGCACGTAGAGCCATCATCATCCAATTCCAAGGCTCTTAGCATAGACTTGGTAAATTCTTCACAAACCAGTGGATCCAAGAGAGCAATATCAGAGCCGTCCATGGAGTTGGCCAACCCAAGAAATGAAGCCGCCTCTGCACCTGAGCCACCCAAAGGTGTCAAGCAGCGAGTGAGCATTGGCAAGGGTCCTACCTCAAGTTCTGAACATGAAGGACCAAAGACACCAGATCCAAAGACACTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTGAGGAAAAAGGCCTATGTTCAGCAGCTAGAATCGAGTAGGATTAGGCTCAATCAGCTGGAACAAGAACTACAGCGTGCAAGAGGCCAAGGCATGTTCTTTGGTGGGGGTGGTGCAATTGTGGCAGGAGAGCAAGGCCTTCCTGTCCCTATGAATAGCACTAGCTCAGAGGCTGCAATATTTGATGTGGAATATGGTAGATGGCTAGAGGAGCACCACCGTTTAGTTTGTGAGCTGAGAGCTGCAGTTCAAGAGCACCTTCCTGAGGACGAGCTTAGGATGTTTGTGAACAATTGCTTGGCACATTATGACCAAGTCATGAACCTCAAGTGCTTAGTGGCCAAAACAGACGTATTCCATGTTTTTTCTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGGATTCAAACCATCTGAACTCATCAAGATTGTTCTGACTCAAATTGAGCCTTTAACGGAGCAACAAATATTGGCTATATGTGGATTGCAACAATCTACACAAGAAGGAGAAGAGGCTCTTTCTCAAGGGCTTGAAGCTCTCAATCAATCTCTTGCAGACACTATCACATCAGACTCATTGAGCTATCCTCCTAACATGGCTAATTACATGGGACAAATGTCTGTGGCCATGAACAAGCTCGGAGCTCTTGAAGGTTTGGTGAGACAGGCAGATTGTCTGCGGCACCAAACCATTCACCGTCTGCATCAGATCCTAACGACGCGTCAAGCGGCAAGGTGTTTTCTGGCCATGGCGGAGTACTTCCACCGTCTGCGAGCTCTGAGTTCTCTGTGGGTGGCACGCCCTCGCCAAGAATGA 1485 0.4781 MMASSVKNNTNPTTTQLQPLPPPQQHRHPHHLFQHHHHHHQTPEHQISFGMMQPSSSSSVPGNYLLSKDSGAYDLGELDQALFLYLDGQAGEPSSVNQDQQRQNNSSSSGMRPPTLNIFPSQPMHVEPSSSNSKALSIDLVNSSQTSGSKRAISEPSMELANPRNEAASAPEPPKGVKQRVSIGKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARGQGMFFGGGGAIVAGEQGLPVPMNSTSSEAAIFDVEYGRWLEEHHRLVCELRAAVQEHLPEDELRMFVNNCLAHYDQVMNLKCLVAKTDVFHVFSGMWKTPAERCFMWIGGFKPSELIKIVLTQIEPLTEQQILAICGLQQSTQEGEEALSQGLEALNQSLADTITSDSLSYPPNMANYMGQMSVAMNKLGALEGLVRQADCLRHQTIHRLHQILTTRQAARCFLAMAEYFHRLRALSSLWVARPRQE* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1239 494 MobiDBLite consensus disorder prediction 46 63 - -
Lja1g1239 494 MobiDBLite consensus disorder prediction 1 15 - -
Lja1g1239 494 Gene3D - 201 249 - -
Lja1g1239 494 Coils Coil 221 248 - -
Lja1g1239 494 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 200 244 IPR004827 GO:0003700|GO:0006355
Lja1g1239 494 SMART brlzneu 198 272 IPR004827 GO:0003700|GO:0006355
Lja1g1239 494 MobiDBLite consensus disorder prediction 28 42 - -
Lja1g1239 494 ProSiteProfiles DOG1 domain profile. 276 490 IPR025422 GO:0006351|GO:0043565
Lja1g1239 494 MobiDBLite consensus disorder prediction 92 153 - -
Lja1g1239 494 MobiDBLite consensus disorder prediction 92 205 - -
Lja1g1239 494 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 205 220 IPR004827 GO:0003700|GO:0006355
Lja1g1239 494 MobiDBLite consensus disorder prediction 1 63 - -
Lja1g1239 494 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 85 493 - -
Lja1g1239 494 Pfam Basic region leucine zipper 199 243 IPR004827 GO:0003700|GO:0006355
Lja1g1239 494 PANTHER TRANSCRIPTION FACTOR TGA9 85 493 - -
Lja1g1239 494 Pfam Seed dormancy control 294 368 IPR025422 GO:0006351|GO:0043565
Lja1g1239 494 SUPERFAMILY Leucine zipper domain 202 244 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1239 Lja-Chr1 12798435 12806326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1239 62 494 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 62.416 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja1g1239 DOG1 9.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1239 K14431 - gmx:100815176 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1239 1 12798435 12806326 Lja1g1239 1 12798435 12806326 ECH
Lja1g1239 1 12798435 12806326 Lja5g2282 5 40368709 40375779 PCT