Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1237 ATGAGTCTCCAAAGCAATTCCATTTCTCTTTTGGTTCCCCTGGCTGCAATTTTTGCATCTTTGTATCTCATAAATCCAAATCCACATTTCCTCAACAATTTCACATACTCCAATATCACAACCTTTTCACCTTCATCTATATACTTGGCTCTTCCTTTAACTTACAACACCGGCAGAGACAATCATTATCATCGTCGCCGACCGCACAATAAACAACCTGATAGTGACAATGGTGGTTCTGTTTGTGATGATTTTCCACCAGGCATTCCACCTCCAACCACCAATACCACTTCTTATCTTTGTGTTGATCGAAAAGGGTGTTGTAATTTCACAACAGTACAAGCAGCCGTGAATGCAGTTCCTGATTTCAGTGTTAAAAGAAACATAATATGGATTAATAGTGGCATCTACTTTGAGAAAGTCATGGTGCCAAAAACCAAACCCAACATAACATTCCAAGGACAAGGCTACACTTCAACTGCAATTGCATGGAATGATACTGCAAAGTCTGCAAATGGCACATTTTATAGTGGCTCCGTTCAAGTTTTTGCCCCCAACTTCATTGCTAAGAACATAAGCTTTATGAATTTAGCACCAATGCCAGCCCCTGGCGTAGAAGGAGCACAAGCAGTAGCTATTAGAATATCAGGAGATCAAGCTGAATTCAGGGGTTGTGGTTTCTTTGGAGCACAAGACACCCTTCATGATGATAAGGGTCGTCATTACTTCAAAGATTGCTATATTCAAGGCTCCATTGATTTCATATTCGGCAATGCAAGGTCACTCTATGAGAACTGTCAACTAGTTTCAATAGCGAATCCAGTACCCCCGGGACAAAGGAGCATAAATGGTGCTGTTACAGCTCATGGAAGAGTTTCCATGGATGAAAACACAGGATTTGCATTTGTGAACAGCACAATAGGAGGCAACGGCAGAATATGGTTGGGCCGGGCATGGAGGCCGTATTCCCGGGTTGTTTTCGCCTTCACGGCGATGTCAGACATCATTGCCCCGGAAGGTTGGAATGATTTCAATGACCCTACAAGAGATCAAACTATCTTCTGTGGAGAATACAATTGCTCTGGACCAGGGGCTACTGCGAATTTGAGGGCATCTTATGTCCGAAGGTTAAACGATACACAAGCTTTTCCATTCCTCAACTCAAGTTTTATTGATGGTGATCAATGGTTGGAAACATAG 1200 0.4242 MSLQSNSISLLVPLAAIFASLYLINPNPHFLNNFTYSNITTFSPSSIYLALPLTYNTGRDNHYHRRRPHNKQPDSDNGGSVCDDFPPGIPPPTTNTTSYLCVDRKGCCNFTTVQAAVNAVPDFSVKRNIIWINSGIYFEKVMVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFAPNFIAKNISFMNLAPMPAPGVEGAQAVAIRISGDQAEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCQLVSIANPVPPGQRSINGAVTAHGRVSMDENTGFAFVNSTIGGNGRIWLGRAWRPYSRVVFAFTAMSDIIAPEGWNDFNDPTRDQTIFCGEYNCSGPGATANLRASYVRRLNDTQAFPFLNSSFIDGDQWLET* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1237 399 Pfam Pectinesterase 102 394 IPR000070 GO:0030599|GO:0042545
Lja1g1237 399 Gene3D - 93 399 IPR012334 -
Lja1g1237 399 PANTHER PECTINESTERASE 8-RELATED 8 398 - -
Lja1g1237 399 MobiDBLite consensus disorder prediction 60 87 - -
Lja1g1237 399 SUPERFAMILY Pectin lyase-like 98 397 IPR011050 -
Lja1g1237 399 ProSitePatterns Pectinesterase signature 2. 248 257 IPR033131 -
Lja1g1237 399 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 8 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1237 Lja-Chr1 12766639 12771147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1237 71 398 Carbohydrate Esterase AT1G05310 70.732 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1237 - - gmx:100806629 687.567