Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1234 ATGTTTACAAATAAAATTGTTGGTATACTTGAATGTCATATAAAAATTCAAGGACTAAACCTCACTGGGTTTCTTGGAAGCATGCTAAATAATCTACATAACTTGAAGGAACTTGATGTTAGTTCTAATAACATTTTGGGTGAAATTCCGTTCGGTTTACCTCCCAATGTCACACATATGAATTTAAGCCACAATTGCTTAATTGGACCCATTGGCAATGTGTTTACTGACTTACACAATCTCGAAGAATTGGACCTTTCATACAATAATTTCTTGGGAGATCTACCATGTTCATTTGGATCCCTAACAAGCCTTGCTAGATTGTTCCTGCAGAATAACAAATTCACTGGATCAGTCGCCTACCTGGCTGAACTTCCACTTACTGATTTGAACATTCAAGATAATTTGTTTAGTGGCATTCTTCCACATCATTTCCAGTCCATACAAAATTTATGGATTGGAGGGAATAAATTCCATGCAACGGACAACTCTCCTCCCTGGACTTTTCCTTGGGATACTTTACAAGTTGACCATAATATTAGTCACCCACCCACAGCCACAACTCAGGCAAATGCCATAAAGAACTATGCTCCTCCCAAAGTAAGTGAGTACAAGAAGAAACATATAGGTCCTGGAGGAATAGCTCTAATGGTTGGTGGGGGAACACTTCTGGCTACATGTCTGACATTCTTTGTTGCAATCCGTTTGAACAAACTCCGTGCACAAAGCTTTGACTTGAAGAACTTTGAAAGCAACCATATCTCTTTGCATTCTCATCCAACCAGTGCAACCATAGAGATCTCTTCTGCTGCACTGGATGAGAGCCCACAAATCCCACCATCTTATACTGCATCCCTTTTGGGTCCAATGCGATTGCCTTCCCTGCACCACAAAAATGTAGAGGAATCAGCAAGAAGGAGTTTTTCCAGAAGACGCAGATTCACCGGAAAGACGAATATTTACACAGAAGCAGAGCTTCAGTTAGCCACCAACAACTTCAATGAAGGCAACCTTCTGGGAGAGGGATCTCTTGGTCCTGTTTACATAGCTAAATTTACGGATGGCAAAGTTTTGGCTGTGAAGAATATAGCAATGGCTGGACAGTCTTTCAGAGAAGAGGAAAAGTTCCTGGATGTCATTTGCACGGCTTCCCGACTGAAGCACCCCAACATTGTAGCACTCAATGGTTATTGTTTGGAGCGCAGAAAGCATCTTCTTGTTTACGACTACATTGGAAATTTAACTCTAGGCGATGCTCTTCACAGTGGGGCATGCAAGCCTCTATCGTGGATCCACCGCCTTCGGATTGCTGTAGGTGTTGCCCAGGCCCTGGACTATTTGCACTCAGCATGTTGCCCCCCTGTGGCCCATGGTAACTTGAAGGCTGCAAATGTTCTACTGGATGAAAATTTCATGCCTCGTGTTTGTGACTGTAGCTTGGCTATTTTGAGACCATTGAGGAGTGATCTAGTTCAGATTCCAGCTCCTGAGATTATTGGTAGAGAGAGAGGCTACTGCAGCAGAAGGAAAGACGTGTTTGCCTTTGGGGTATTGCTTCTGGAACTGTTAACAGGAAGGAAACCTTTGGATGGCTATCTTTTTCATCAATCTTGCATTCCATTTATTTCAACACGTGCCAGGCCAAGTGAGGAGCAATATCTGGTGAAATTGGCTTCACCCAAGCTTCATGATATCGTGGATCCCAGCATGAAAAGGACATTTTCATCCAATGAACTTTCATGTTATGCTGATATCATCTCCCTCTGTATACAGCCTTTAAAGCAATTCCGTCCTCCAATGTCGGAAGTTGTGGACTCTCTTGTATCTTTTTCCCAAAAGTTCAGCTTTGCAGAGAGCGATATGGAAGATGGTGCTGATTTTGATCTATTTGAGAGGTCTTTCCGTTCAACCAACACATGCTTTATAGGTTCACCTGTATTGAGCCATCTTAGGTACTTGGAGAATGATGATTCATCACTCATGAAAACTATTAAGGGTGCAACGACTGGTTTAGTTGCCGGCACTATCTGGGGTACCGTCGTTGCCACATGGTATGATGTCCCTCGTGTTGAGAGAAATGTTGCTCTCCCGGGGCTAATTAGGACTTTCAAGATGATGGGCAACCATGGATTGACCTTTGCCGCCATAGGAGGAGTCTACATTGGTGTGGAGCAGTTGGTGCAGAACTTTAGGGGTAAGAGAGATCTGGTGAATGGAGCTGTTGGTGGATTTGTTGCTGGTGCAGCTATTCTGGGTTACAAAGGAAGGAGCATCTCAACTGCACTTTCTGCTGGATCAGCATTGGCATTCACATCTGCAGTTCTTGATTTCGGAGGTCAGACAATGAAACATGACGATGGGAAGGAGTACGCGGCATACACCACAAAGAAAAGACCCAGCCCTGATGCATAA 2412 0.4353 MFTNKIVGILECHIKIQGLNLTGFLGSMLNNLHNLKELDVSSNNILGEIPFGLPPNVTHMNLSHNCLIGPIGNVFTDLHNLEELDLSYNNFLGDLPCSFGSLTSLARLFLQNNKFTGSVAYLAELPLTDLNIQDNLFSGILPHHFQSIQNLWIGGNKFHATDNSPPWTFPWDTLQVDHNISHPPTATTQANAIKNYAPPKVSEYKKKHIGPGGIALMVGGGTLLATCLTFFVAIRLNKLRAQSFDLKNFESNHISLHSHPTSATIEISSAALDESPQIPPSYTASLLGPMRLPSLHHKNVEESARRSFSRRRRFTGKTNIYTEAELQLATNNFNEGNLLGEGSLGPVYIAKFTDGKVLAVKNIAMAGQSFREEEKFLDVICTASRLKHPNIVALNGYCLERRKHLLVYDYIGNLTLGDALHSGACKPLSWIHRLRIAVGVAQALDYLHSACCPPVAHGNLKAANVLLDENFMPRVCDCSLAILRPLRSDLVQIPAPEIIGRERGYCSRRKDVFAFGVLLLELLTGRKPLDGYLFHQSCIPFISTRARPSEEQYLVKLASPKLHDIVDPSMKRTFSSNELSCYADIISLCIQPLKQFRPPMSEVVDSLVSFSQKFSFAESDMEDGADFDLFERSFRSTNTCFIGSPVLSHLRYLENDDSSLMKTIKGATTGLVAGTIWGTVVATWYDVPRVERNVALPGLIRTFKMMGNHGLTFAAIGGVYIGVEQLVQNFRGKRDLVNGAVGGFVAGAAILGYKGRSISTALSAGSALAFTSAVLDFGGQTMKHDDGKEYAAYTTKKRPSPDA* 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1234 803 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 16 642 - -
Lja1g1234 803 Pfam Tim17/Tim22/Tim23/Pmp24 family 662 770 - -
Lja1g1234 803 SUPERFAMILY Protein kinase-like (PK-like) 312 607 IPR011009 -
Lja1g1234 803 Gene3D Phosphorylase Kinase; domain 1 294 410 - -
Lja1g1234 803 SUPERFAMILY L domain-like 15 160 - -
Lja1g1234 803 Pfam Leucine rich repeat 34 91 IPR001611 GO:0005515
Lja1g1234 803 Gene3D Transferase(Phosphotransferase) domain 1 412 631 - -
Lja1g1234 803 Gene3D Ribonuclease Inhibitor 11 195 IPR032675 -
Lja1g1234 803 ProSiteProfiles Protein kinase domain profile. 333 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g1234 803 PANTHER OS01G0253100 PROTEIN 16 642 IPR045271 GO:0004714|GO:0006468
Lja1g1234 803 Pfam Protein tyrosine and serine/threonine kinase 336 553 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1234 Lja-Chr1 12736469 12746666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1234 14 650 Strubbelig Receptor Gene Family AT5G06820 47.591 4.64e-176 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Lja1g1234 PK_Tyr_Ser-Thr 2.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1234 - - gmx:100775254 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1234 1 12736469 12746666 Lja1g1234 1 12736469 12746666 ECH
Lja1g1234 1 12736469 12746666 Lja5g2287 5 40761980 40766844 PCT