Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1232 ATGGAGATACAGACTTCTGGCAGGCCAATTGAGTCCTTGCTAGAGAAAGTCCTTTGTATGAATATTCTGTCATCTGATTACTTCAAGGAGCTCTATCGCTTAAAAACATACCATGAAGTTTTTGATGAGATCTACAATCAAGTTGATCTCGTGGAACCATGGATGACGGGGAATTGTCGTGGTCCTTCAACTTCTTGCTGTCTTCTTTACAAGTTCTTTACAATGAATGGGCTATTGAAACAACCTGATTCTCCTTACATAAGAGCGGAAGGCACTAACTTGCACCTTGTATTCCCTTCTCTAGATCTCGAGTTTTGTATAATGAGACAATGGATGGTTTGGTTGTATTATACCTGGCATCATCATAAGAGATACGTTGCTGATCCAAAGACTCTGTGGAGCTGGTTTGAACCATATATAAAGGATGATGAGGAATTTTCTCCTGGATCTAATGGACTAATGACTACAATGGGTGTATATATCCGTGATTTGCTCTGTGGACAGCTGAAGGCTTATGAGGAGCTTGGTGTTGCAGCTTCTACATTGGTGGATGCTGTTGCTGCTAGCCCTAGCCTTTTGGTTGGGGATGTTGACCTTGATTTTGTCAAGGTTGTGGAGAAGCTGAAGAAGCATTTTGTTGCAAAGGGTGGTGGTTGGGTTGAGGAGCACTTTTTGGATGGTGGAGTTTATTGTAATTGGGGCATGGTGCTTAGGCTCTTGTGCTTGCTTTCAGAGGTTGGTTTCAGTGAGGGACATATAGATGAGTTGATTCGTGACCGCCCGTGTGTTGTTTTTCATGAATCAGGAGGTAGGGCACTCTCCCTGATTGCATTCTTGAGCAAATTTGAATTGTCCGTGGACCGGATTGCTCTCATGTTCCTCGAGTTTCCGCAGATTCGGATGGAGAAGTTCTACTCCAACTTGAGGCGTTGTTTGCAGTTCCTAACTGTGATTGAGATGCAGGGTGAAGAGATTGGAAGGATTTTCCAGTCACACACGTTGCTGTTGGGTTCCTTTACTATGAAGAAAACAAAGAGTTTGCTTGTTGACATGAATGTTAGTAGGACGCGGCTTTGTGGAATGGTGCAGGATAACCCTCAAGAAATGAAGAATTGGGCTGTGGGAATAAAAGTCCAGCCTATGGTGAGCAGAAAGGAAGAGCAGCAAACGATGTTGCGGAAAACAGAGTTCTTGGTGAGGTCCCCATTTGTCGAAAACGAAAACTCCGAGAATTTGAAAGAGGCGTTTAAGCTGTTCAGAGGCGTGGATAGTGAGGATGTCCGCAAAATGCTCAGAGTTTCCCCTCAGATTATTAATCAGAGCATAGATAGGATCAAAATGAAAATGGAGTATCTTGTAAAAGAAGGATATTCTATATCAGATTTAGTGACTTTCCCATCTTTTCTTTCCTATACACCTAGCAGAGTTAAGCTTAGGTTATCAATGAATAACTGGCTCAAAGACCAAGGGGTTGCCGATGCAGGCCTTGCTTTGAGCACTACCATTGCTTGCACAGAACATGGATGGCCAAATGAAGGATCAGGGATGTCAGCAACCACGATATTCTACCAATATTATCATGAATTTTTTCCACCCAGAGGAACTCTTACTCAGCAAAAAAGATTGACTATGGTGGTAAGCAAATGTCATATTCAGAGAAGTTTCAGACTTGAGACAAAATTTGTTGGGAGAACATCCCATCTATGGCAGTGCCTCAGGAATCAGGATAAGTCTCACATGTGGGGAATCAAATGGAGATATCAAGTAAAAAATTCAAACAATATTAAATGA 1791 0.4232 MEIQTSGRPIESLLEKVLCMNILSSDYFKELYRLKTYHEVFDEIYNQVDLVEPWMTGNCRGPSTSCCLLYKFFTMNGLLKQPDSPYIRAEGTNLHLVFPSLDLEFCIMRQWMVWLYYTWHHHKRYVADPKTLWSWFEPYIKDDEEFSPGSNGLMTTMGVYIRDLLCGQLKAYEELGVAASTLVDAVAASPSLLVGDVDLDFVKVVEKLKKHFVAKGGGWVEEHFLDGGVYCNWGMVLRLLCLLSEVGFSEGHIDELIRDRPCVVFHESGGRALSLIAFLSKFELSVDRIALMFLEFPQIRMEKFYSNLRRCLQFLTVIEMQGEEIGRIFQSHTLLLGSFTMKKTKSLLVDMNVSRTRLCGMVQDNPQEMKNWAVGIKVQPMVSRKEEQQTMLRKTEFLVRSPFVENENSENLKEAFKLFRGVDSEDVRKMLRVSPQIINQSIDRIKMKMEYLVKEGYSISDLVTFPSFLSYTPSRVKLRLSMNNWLKDQGVADAGLALSTTIACTEHGWPNEGSGMSATTIFYQYYHEFFPPRGTLTQQKRLTMVVSKCHIQRSFRLETKFVGRTSHLWQCLRNQDKSHMWGIKWRYQVKNSNNIK* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1232 596 Pfam mTERF 241 401 IPR003690 GO:0003690|GO:0006355
Lja1g1232 596 Pfam mTERF 406 506 IPR003690 GO:0003690|GO:0006355
Lja1g1232 596 PANTHER UNCHARACTERIZED 1 91 IPR005037 -
Lja1g1232 596 SMART mt_12 183 215 IPR003690 GO:0003690|GO:0006355
Lja1g1232 596 SMART mt_12 428 458 IPR003690 GO:0003690|GO:0006355
Lja1g1232 596 SMART mt_12 290 321 IPR003690 GO:0003690|GO:0006355
Lja1g1232 596 SMART mt_12 459 492 IPR003690 GO:0003690|GO:0006355
Lja1g1232 596 Gene3D Transcription termination factor 3, mitochondrial 272 512 IPR038538 -
Lja1g1232 596 PANTHER PRP38 FAMILY PROTEIN 1 91 - -
Lja1g1232 596 PANTHER PRP38 FAMILY PROTEIN 123 170 - -
Lja1g1232 596 Pfam PRP38 family 9 166 IPR005037 -
Lja1g1232 596 PANTHER UNCHARACTERIZED 123 170 IPR005037 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1232 Lja-Chr1 12726339 12732923 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja1g1232 mTERF 9.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1232 - - lja:Lj1g3v4317450.1 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1232 1 12726339 12732923 Lja1g1232 1 12726339 12732923 ECH