Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1231 ATGATCGACCTTCGAAAACTCAGATCAACGTTCCCATTTGCCAATTTCACACAAAACCACTTGATCCATAAACCCCCACAAAACCCTAGATTTCATTCCACGAAGAAACCAATCCAATCGAAGGTGAAACCCTTTCCCAAATCCATCGTGAAAGAAGCCCAAGCCGCATTGCTAGAGTACCTTCACTCCACGAGAAGCTTGCAGTTCTCCGACGCTGACAACATGTGCAAAAACTCACCATTCTTCCTCCAAGACCTCTTGAAGAAAACCCAAATCCACAACAAGCACAAAGCAGCCACCACCACCACCGCAGCTGCCGCCGCCGCCGCAGCAAAGCATTCCATTTCGCGCTACCTCCGCTACCACCCCATCAACGAGTTCGAACCCTTCTTCGAGAGTGTGGGGTTGAAGCCTTCTGAGTATGCTTCTCTTCTCCCCCGTGACATGATGTTTCTCAATGATGATGCTTTGTTGATGGAGAATTATCAAACTCTGTGTAACTTTGGGGTTCAACGCACCAAGGTAGGTAGGATTTTCAAGCGTGCTCCGGAGGTTTTTCGGTATGAATCTGGGGTTTTGAGCTTGAAGTTGAAGGCTTATGAGGAGCTTGGTGTTGCAGCTTCTACATTGGTGGATGCTGTTGCTGCTAGCCCTAGCCTTTTGGTTGGGGATGTTGACCTTGATTTTGTTAAGGTTGTGGAGAAGTTGAAGGAGCATTTTGTTGCAAAGGGTGGTGGTTGGGTTGAGGAGCATTTTTTGGATGGTGGGGTTTATTGTAATTGGGGCATGGTGCTTAGGCTCTTGTGCTTGCTTTCAGAGGTGGGTTTCAGTGAGGGACAGATAGATGAGTTGATTCGAGACCGCCCTTGTGTTGTTTTTCAAGAATCGGGAGGTAGGGCGCTCTCCCTGATTGCATTCTTGAGCAAATTTGGATTAGCTGTGGACCGGATTGCTCTCATGTTCCTTGAGTTTCCGCAGATTCGGATCGACAAGTTCTACACCAACTTGAGGCGGTGTTTGCAGTTCCTGACTGAGATTGAGATGCAGGGTGAGGAGATTGGAAGTATTTTTCAGTCACACACCTTGTTGTTGGGTTCCTTCACTATGAAGAAAACAAAGAGTTTGCTTGTTGACATGAATGTTGGCAGGAAGCGGCTTTGTAGAATGGTGCAGGATAACCCTCAAGAAATGAAGAATTGGGCTATGGGAATAAGAGTCCAGCCTATGGTGAGCGTAAAGGCAGAGCAGCAGACGATGTTGCGGAAAACAGAGTTCTTGGTGAGGTGGGGATTTGTCGAAAATGAAAACTCCGAGAATTTGAAAGAGGCGTTTAAGCTGTTCAGAGGTAGGGGAACTGAGCTTCAGGAGAGGTTTGATCTTATTGTTAATGCAGGCGTGGATAGTGAGGATGTCCGCAAAATGCTCAGAGTTTCCCCTCAGATTATTAATCAGAGCATAGATAGGATCAAAATGAAAATGGAGTATCTTGTAAAAGAAGGATATTCAATATCAGATTTAGTGACTTTCCCATCTTTTCTTTCCTATACACCTAGCAGAGTTAAGCTTAGGTTATCAATGTATAACTGGCTCAAAGACCAAGGGGTTGCAGATGCAGGCCTTGCTTTGAGCACTACCATTGCTTGCACAGAGAGAATATTCATACAGCAGTATGTAAAGCGCCATCCATCTGGCCTTCAAGTTTGGCAGAAATTAAAGAAAGAAATTCTTTCTGAGGATTAA 1740 0.4552 MIDLRKLRSTFPFANFTQNHLIHKPPQNPRFHSTKKPIQSKVKPFPKSIVKEAQAALLEYLHSTRSLQFSDADNMCKNSPFFLQDLLKKTQIHNKHKAATTTTAAAAAAAAKHSISRYLRYHPINEFEPFFESVGLKPSEYASLLPRDMMFLNDDALLMENYQTLCNFGVQRTKVGRIFKRAPEVFRYESGVLSLKLKAYEELGVAASTLVDAVAASPSLLVGDVDLDFVKVVEKLKEHFVAKGGGWVEEHFLDGGVYCNWGMVLRLLCLLSEVGFSEGQIDELIRDRPCVVFQESGGRALSLIAFLSKFGLAVDRIALMFLEFPQIRIDKFYTNLRRCLQFLTEIEMQGEEIGSIFQSHTLLLGSFTMKKTKSLLVDMNVGRKRLCRMVQDNPQEMKNWAMGIRVQPMVSVKAEQQTMLRKTEFLVRWGFVENENSENLKEAFKLFRGRGTELQERFDLIVNAGVDSEDVRKMLRVSPQIINQSIDRIKMKMEYLVKEGYSISDLVTFPSFLSYTPSRVKLRLSMYNWLKDQGVADAGLALSTTIACTERIFIQQYVKRHPSGLQVWQKLKKEILSED* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1231 579 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 34 572 - -
Lja1g1231 579 PANTHER CGI-12 PROTEIN-RELATED 34 572 IPR003690 GO:0003690|GO:0006355
Lja1g1231 579 Gene3D Transcription termination factor 3, mitochondrial 99 252 IPR038538 -
Lja1g1231 579 Gene3D Transcription termination factor 3, mitochondrial 300 572 IPR038538 -
Lja1g1231 579 SMART mt_12 176 206 IPR003690 GO:0003690|GO:0006355
Lja1g1231 579 SMART mt_12 503 536 IPR003690 GO:0003690|GO:0006355
Lja1g1231 579 SMART mt_12 472 502 IPR003690 GO:0003690|GO:0006355
Lja1g1231 579 SMART mt_12 318 349 IPR003690 GO:0003690|GO:0006355
Lja1g1231 579 Pfam mTERF 414 553 IPR003690 GO:0003690|GO:0006355
Lja1g1231 579 Pfam mTERF 36 237 IPR003690 GO:0003690|GO:0006355
Lja1g1231 579 Pfam mTERF 269 434 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1231 Lja-Chr1 12719439 12721513 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja1g1231 mTERF 9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1231 - - lja:Lj1g3v4317450.1 1128.24