Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1230 ATGGAAGATTTGAAGAAGAGGAAGCTCGAGGAGGCTACCAATGGCGGTTTCACTTCCGTGGAAGACCTTCGCCTCCTCATCGAACCTCTCGCCAAACCTCAGCTCGTCGATCTTCTCGCTAAACTAGGGTCCCAATATCCTTCCATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCCTGGCCTGGAATACCTCATCAGAAACTTTGTGTGCTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGGGCTGTGATCTATGATAAAGCGACTGGAAAATCCCGTGGCTATGGATTTATCACTTATAAAAATATGGAATCAACTCAGGCTGCATTGAGAGCACCCAGCAAGTTAATTGATGGAAGATTGGCTGCCTGTAATCTAGCTTGTGAGGGCCTAAGCGGACCAAGCAGTGCTCTTGATGTTTCCCAGAGGAAGCTTTACATTGGAAGCTTATCACCAGAAGTCACTAGTGAAGTGCTGCTTAGCTTTTTTGGGAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGTATCACGTGGTTTTGGCTTTGTTACGTACAAGACAACGGAGGCTGCAAAGAAGGCCATAGATGACCCAGAAAAGACTCTTGGGGGGAGGACTATAATTGTAAAATTTGCTGGTGCCCACAAGGGTAAAACTGGCCAGCCGCCATTTCCTGCAGGAGTTCCAATGGCAGCCTTACCTATGACCCCAGGATATGTGCAGTCTGGAAAACCTCATATCAGTTCTGCCCCCTCTGTCGGTTACACATACCCCCAACCTGTAGCACCATATCCTCTTGCTTCTTATCCAATACCTCCCCTTACTGCACCACCCTCTGCTTACCCAGCACAAGGGCAGGTTCCTTATGCTCCAGTTTCTGCCAAGAAAGACCAACTCGGGGTCCCTCCAACTCAACCTGTGGGAATGAACAAGTACCCTTATTACTATCCCAAGCAATAA 1014 0.4714 MEDLKKRKLEEATNGGFTSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPYPLASYPIPPLTAPPSAYPAQGQVPYAPVSAKKDQLGVPPTQPVGMNKYPYYYPKQ* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1230 337 Gene3D - 55 142 IPR012677 -
Lja1g1230 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 155 IPR000504 GO:0003723
Lja1g1230 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Lja1g1230 337 Gene3D - 143 240 IPR012677 -
Lja1g1230 337 CDD RRM_RBM24_RBM38_like 64 139 - -
Lja1g1230 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Lja1g1230 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 225 IPR000504 GO:0003723
Lja1g1230 337 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 13 337 - -
Lja1g1230 337 SUPERFAMILY RNA-binding domain, RBD 150 237 IPR035979 GO:0003676
Lja1g1230 337 SUPERFAMILY RNA-binding domain, RBD 53 140 IPR035979 GO:0003676
Lja1g1230 337 SMART rrm1_1 65 137 IPR000504 GO:0003723
Lja1g1230 337 SMART rrm1_1 156 228 IPR000504 GO:0003723
Lja1g1230 337 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 13 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1230 Lja-Chr1 12714795 12718633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1230 147 265 C2H2 Transcription Factor Family AT2G19380 31.496 1.84e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1230 K12741 - gmx:100776344 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1230 1 12714795 12718633 Lja1g1230 1 12714795 12718633 ECH