Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1229 ATGATGAATGGAACTCCTTGTTGGGAAGTTGTTGGATCAGAACTTCTGAGTTTTGAACCAATCAAATCACCCTACAACTTTGTGACAACAACAGCATCACCTGTTTTTGGTGCAAGTGCTAAAAGCCTTGTGAGTTTTCAAGCTCAAGAACATGATCATGGTCAGAATCAGAACATTGATGTCCCTGGTTGGTGCTATGAGTTTCCCTCTACACCAATGATGATTTTCCAAGGCTCTGAAGATAACTTCACTAATGTTACCAGTACAGTACAAGATCGACCCTCCTCTCAATTCACAAGCTCCTTGCACTCGGTTGCTGAGTCTTTCATATCTAGCAGTGAAGATAGCCATTCTTGTTCTGAAAATTATGGTAAAATTGAGCCTGGTATGCCATTATATGATCACTTGCTACAAGAACAATTGAGGAATAATGCTGCCACAGACAAGAGTCCCCTTGAAATTTCCTTTCAGAGAAATCAGTTAGGCTCATGTACAAAGCAAGAAAAGCAGGCTCCTGGACTTTCTAGGAGATCTCCAACAAGTAAAAGAAGAATAAGATGGAGCAAGGATCTGCATGAGCCATTTATGATGATTGTTAATAGCCTTGGTGGTCCAGAAAAGGCAAAGCCTAAGGCTATTCTAGAGATGATGAAATCAGATTTGCTGTCCATTTCTCACATAAAAAGTCATTTGCAGAAATGTAGGTCTACATCTTACATGCACAAGGCTTTGCAGGAAAGATCTGAGGGAAGACATAGAACAGATGGGGTTACTGAGCTTCAAGTCCAAATCAGCCATATGCAAATTGAGGAATCAAGAAAACTGCAACTAGAGGTACGGAGGAGTATTTGCCTACAACTAGAGATGCAACAAAATTTGAAAATGCTTATTGAAGGGCAGAGGAAGGAGCTCAAGGTAATGTTAGATCGCCAAAAGGAAAGGACCTAA 948 0.4061 MMNGTPCWEVVGSELLSFEPIKSPYNFVTTTASPVFGASAKSLVSFQAQEHDHGQNQNIDVPGWCYEFPSTPMMIFQGSEDNFTNVTSTVQDRPSSQFTSSLHSVAESFISSSEDSHSCSENYGKIEPGMPLYDHLLQEQLRNNAATDKSPLEISFQRNQLGSCTKQEKQAPGLSRRSPTSKRRIRWSKDLHEPFMMIVNSLGGPEKAKPKAILEMMKSDLLSISHIKSHLQKCRSTSYMHKALQERSEGRHRTDGVTELQVQISHMQIEESRKLQLEVRRSICLQLEMQQNLKMLIEGQRKELKVMLDRQKERT* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1229 315 SUPERFAMILY Homeodomain-like 180 236 IPR009057 -
Lja1g1229 315 Gene3D - 181 240 - -
Lja1g1229 315 MobiDBLite consensus disorder prediction 161 183 - -
Lja1g1229 315 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 7 315 - -
Lja1g1229 315 MobiDBLite consensus disorder prediction 161 177 - -
Lja1g1229 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 315 IPR044848 GO:0003700
Lja1g1229 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 182 236 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1229 Lja-Chr1 12707338 12712672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1229 180 311 G2-like Transcription Factor Family AT4G28610 42.537 6.01e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja1g1229 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1229 - - lja:Lj1g3v4317480.2 617.461