Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1228 ATGAATGAAAACAAAATTGATTGTGTGGGACTGATTCAACAAAGTCATGGACTAACTGGTGATTTTGATTCTGAGTTTGGCAATCATTCTAACACAATTATGAGCAGGTTTGAGTCACCAGCTTCTGCTTTTTATGCAGCAGAAAATTGCATGGGCTTCTCAGAATATGATTACCAAGTTGGTAATACTAATCAATCTTTGAGCTCTCAGTTAAATAAGGTTCATGATTTGGAATTCCCTTTATATCAATCTCCAAGGTTAAACCTTTTCATGAATTCAGCAAACCAACCTGACCCTTTATCAAACACTTTGCAAGCAATGGTGAAATCTCAATTGAATAGTAATCAAGACAACAAAATTTCATGTGGGGATTTTCCCAGTTCCAAGTTTGTTCCAATTGAACCACAGAAGCTTTTATATGATGGTGTTACTTCAGTTAGCTGGAGCTCATCAAGTCTTAACAAAGGAAATCAGGATTGCATGGCTGTTTCTGGATCTTCAGGAAGTGTGTCAACTGCTTTTGGAAACTCTTCTTCTAATGGATCAGTGATCTTGAGTAAAACGCGTATAAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGTGGTGCTGATAAGGCAACACCAAAAGCAATATTGAAGATGATGGACTCAGATGGTTTGACTATCTACCATATAAAAAGTCATTTGCAGAAATACAGAAATGCAAAATTCATGCCAGAGTCAGCTCAAGGGATATCTAACAAAAGAGTCCATACAGAAGATGTGCATCATCTTGATTTCAAAACTGGCTTGCAAATTAGAGAGGCACTTCAGCTGCAATTAGATACTCAAAGGCGTCTTCATGAGCAGCTAGAGCTTCAGAGAGCATTACAGTTGCGAATTGAAGAACAAGGCAAGCAGCTGAAAAAAATGTTTGACCAGCAGCAGAGGACAAGTGATAACCTCTTGAATACTCCAGATATAGCCAATGATGCTACAGCAATTAGTCATAAAGATGTTGAAGGTTCTGTTTCTGAAGGGGCTTCAGATTCCTTCTTTTCTTCCAAATCCACAAAAATAACATAA 1086 0.3794 MNENKIDCVGLIQQSHGLTGDFDSEFGNHSNTIMSRFESPASAFYAAENCMGFSEYDYQVGNTNQSLSSQLNKVHDLEFPLYQSPRLNLFMNSANQPDPLSNTLQAMVKSQLNSNQDNKISCGDFPSSKFVPIEPQKLLYDGVTSVSWSSSSLNKGNQDCMAVSGSSGSVSTAFGNSSSNGSVILSKTRIRWTKDLHEKFVECVNRLGGADKATPKAILKMMDSDGLTIYHIKSHLQKYRNAKFMPESAQGISNKRVHTEDVHHLDFKTGLQIREALQLQLDTQRRLHEQLELQRALQLRIEEQGKQLKKMFDQQQRTSDNLLNTPDIANDATAISHKDVEGSVSEGASDSFFSSKSTKIT* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1228 361 Coils Coil 274 294 - -
Lja1g1228 361 Pfam MYB-CC type transfactor, LHEQLE motif 271 317 IPR025756 -
Lja1g1228 361 MobiDBLite consensus disorder prediction 339 361 - -
Lja1g1228 361 Gene3D - 186 245 - -
Lja1g1228 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 166 358 IPR044848 GO:0003700
Lja1g1228 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 29 132 IPR044848 GO:0003700
Lja1g1228 361 SUPERFAMILY Homeodomain-like 185 241 IPR009057 -
Lja1g1228 361 Pfam Myb-like DNA-binding domain 191 240 IPR001005 -
Lja1g1228 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 244 IPR017930 -
Lja1g1228 361 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 187 242 IPR006447 GO:0003677
Lja1g1228 361 MobiDBLite consensus disorder prediction 347 361 - -
Lja1g1228 361 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 166 358 - -
Lja1g1228 361 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 29 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1228 Lja-Chr1 12685427 12687816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1228 173 321 G2-like Transcription Factor Family AT3G04450 50.980 2.49e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja1g1228 Myb_DNA-binding 4.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1228 - - lja:Lj1g3v4317520.1 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1228 1 12685427 12687816 Lja1g1228 1 12685427 12687816 ECH