Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1225 ATGGATTTCCGCAAGAGGGGAAGACCCGAACCCGGTTTCAACTCAAATGGAGGAATCAAGAAATCTAAGCAAGAATTGGAGTCATTATCATCTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCATTTGGTGAGAGCTGCCACTTCTTGCACTATGTTCCGGGTGGTTATAATGCTGTTGCTCATATGATGAATCTAGCACCTTCAGCACAAGCGCCACCTAGAAATGTTGCTGCTCCACCACCACCTGTGCCTAATGGGTCCACACCTGCAGTGAAAACTCGCATATGCAACAAGTTTAACACTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCCCATGGTGAATGGGAACTCGGCAAGCATATTGCTCCTTCATTTGATGATCATCGTCCGATTGGACATGCCCCAGCAGGTCGTATTGGTGGTCGAATGGAGCCTCCTCCTGGTCCTGCTACAGGCTTTGGTGCCAATGCCACTGCTAAGATCAGCGTGGAAGCTTCGCTGGCCGGAGCAATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATTTGTCGTCAAACTGGAGCCAAACTATCAATTCGAGAGCACGAGTCTGATCCAAATCTTAGAAACATTGAACTTGAGGGAAGCTTTGATCAAATTAAGGAAGCTAGTAACATGGTGAAGGATTTGCTGTTGACCCTGCAAATGTCTGCACCACCTAAATCAAACCAAGGTGGTGCTGGTGGTCCTGGCGGCCATGGCCATCATGGAAGCAACAACTTCAAGACAAAGCTGTGTGAGAATTTTGCAAAGGGAACTTGCACTTTTGGAGAACGATGCCATTTTGCACATGGACCTGCTGAATTGCGGAAATGA 891 0.477 MDFRKRGRPEPGFNSNGGIKKSKQELESLSSGVGSKSKPCTKFFSTAGCPFGESCHFLHYVPGGYNAVAHMMNLAPSAQAPPRNVAAPPPPVPNGSTPAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKHIAPSFDDHRPIGHAPAGRIGGRMEPPPGPATGFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFDQIKEASNMVKDLLLTLQMSAPPKSNQGGAGGPGGHGHHGSNNFKTKLCENFAKGTCTFGERCHFAHGPAELRK* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1225 296 SMART kh_6 167 237 IPR004087 GO:0003676
Lja1g1225 296 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 291 IPR000571 GO:0046872
Lja1g1225 296 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Lja1g1225 296 MobiDBLite consensus disorder prediction 17 36 - -
Lja1g1225 296 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Lja1g1225 296 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Lja1g1225 296 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Lja1g1225 296 MobiDBLite consensus disorder prediction 242 261 - -
Lja1g1225 296 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Lja1g1225 296 SUPERFAMILY CCCH zinc finger 98 130 IPR036855 GO:0046872
Lja1g1225 296 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Lja1g1225 296 SUPERFAMILY CCCH zinc finger 265 295 IPR036855 GO:0046872
Lja1g1225 296 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Lja1g1225 296 Pfam KH domain 171 233 IPR004088 GO:0003723
Lja1g1225 296 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Lja1g1225 296 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 296 - -
Lja1g1225 296 MobiDBLite consensus disorder prediction 1 36 - -
Lja1g1225 296 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Lja1g1225 296 Gene3D K Homology domain, type 1 163 262 IPR036612 GO:0003723
Lja1g1225 296 ProSiteProfiles Zinc finger C3H1-type profile. 265 292 IPR000571 GO:0046872
Lja1g1225 296 CDD KH-I 170 233 - -
Lja1g1225 296 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 240 IPR036612 GO:0003723
Lja1g1225 296 Gene3D - 95 131 - -
Lja1g1225 296 Gene3D - 263 296 - -
Lja1g1225 296 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1225 Lja-Chr1 12637525 12640896 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja1g1225 KH_1 5.3e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1225 - - gmx:100803981 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1225 1 12637525 12640896 Lja1g1225 1 12637525 12640896 ECH