Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1222 ATGGTGATGGACAGAGTGCAATGCTCCTACGAGCCCTTGGATGAACCATTCGAGATTGGGAAAGAGATGTATCGAGGACAACAATACAGCCAAATCTACTTCGCTCGCCTTCACCTGATGCGAACACTCTTGCACTCTCTTGTCCCGCATTTGAAACCCAATCTTCCTGTATGCACAGTTTTGGGATTGGAAGAACAAGCGGGCAAGGAGTGTGTCATTGTTGGAACTCTCTATAAGCATATGAAGCTCAAACCTTGCATACTTGATGAGTATTCTAAGGAGAGATCGGCTGTTCCACTTGTCAAGCCACATAACTTCATGCACCCAGATGACCACCTAATTTTGGAAGATGAAAGCGGGAGAGTTAAGCTTGGTGGGGATCTCATTTCACCTTCCGTATACGTAACAGGAATTGTGGTTGCTGTACATGGAAAGGAAACAGAGGCTGGTGAATTTTTGGTTCAGGATGTTCTAGAAGCTGGCTTACCACCACAAATAGAATTTCCACTTAAATCAAGGGAAGACAAATACGTTGTTTTTGTGTCAGGATTAAGTATTGGGAGCAGCAACTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATTACTGGGCATTTAGGAGATGAGAAGGAAAAAAGTATTGCGTCACAAACTGTTCGCGTGGTCATTGCTGGAAATTCTGTTGAGATACCTAGTGGACTTTTTAATGGACAGAATATGGGTTCAAAGGATCTGTCAAGGATATCTGAACCAATAAAGGAGCTAGATATTCTGTTGAATCAGATTGCTGCTGGTTTGCCTTTGGACATAATGCCAGGGCCCAGTGACCCTTCAAATTACTCATTACCACAGCAGGCGCTGCATAGATGCCTTTTCCCTGGGTCGTCAGCATATAACACTTTTACATCTTGTACAAATCCTCATAGTTTTGAGCTTGATAATATCAGGTTTCTTGGGACATCAGGTCAGAATGTAGATGATCTCGAAAAGTATTCAGAGGCAAAAGATAAACTTGAATTCATGGAGAGGACATTAAGATGGAGGCATTTGGCACCCACTGCACCTAATACCCTTGGGTGCTATCCTTATACTGATAGGGATCCTTTCTTCATCGAGAGCTGTCCTCATGTGTACTTTATTGGCAATCAGGATAAATATGACACTCGTGTGATAAAGGGATCAGAAGGGCAGTTGGTGAGACTCATATGTGTTCCTAAATTCAGTGAAACTGGAGTTGCTGTTATGTTAAATCTGAGGGATCTGGAATGTCATGCTCTCAGTTTTGGAACCCAGTTCAGCTCATAA 1308 0.4266 MVMDRVQCSYEPLDEPFEIGKEMYRGQQYSQIYFARLHLMRTLLHSLVPHLKPNLPVCTVLGLEEQAGKECVIVGTLYKHMKLKPCILDEYSKERSAVPLVKPHNFMHPDDHLILEDESGRVKLGGDLISPSVYVTGIVVAVHGKETEAGEFLVQDVLEAGLPPQIEFPLKSREDKYVVFVSGLSIGSSNSNPLQFQLLIDHITGHLGDEKEKSIASQTVRVVIAGNSVEIPSGLFNGQNMGSKDLSRISEPIKELDILLNQIAAGLPLDIMPGPSDPSNYSLPQQALHRCLFPGSSAYNTFTSCTNPHSFELDNIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLGCYPYTDRDPFFIESCPHVYFIGNQDKYDTRVIKGSEGQLVRLICVPKFSETGVAVMLNLRDLECHALSFGTQFSS* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1222 435 Pfam DNA polymerase delta subunit OB-fold domain 28 157 IPR040663 -
Lja1g1222 435 Pfam DNA polymerase alpha/epsilon subunit B 178 387 IPR007185 GO:0003677|GO:0006260
Lja1g1222 435 CDD MPP_PolD2_C 177 429 IPR041863 -
Lja1g1222 435 Gene3D - 169 434 - -
Lja1g1222 435 Gene3D - 34 160 - -
Lja1g1222 435 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 3 429 IPR024826 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1222 2 434 Core DNA Replication Machinery Family AT2G42120 75.982 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1222 K02328 - gmx:100780072 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1222 1 12609691 12618131 Lja1g1222 1 12609691 12618131 ECH