Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1214 ATGGCGGAAGAGAATTCTAATGATGTGAACCCTGATGTGGATCGTGGTTCAAGACCTCATCCAACAACTAGGCCCACGTCCGATAGAACAATTCCGATATTCGAAGAATTCATGAGGCTCGGAACAAATCGACGCGCAAGGTGGAATTGGGAGAATTTTCTTAATCGTTCAACTGAAACTCATGTTCAGGTTCCACAGGAACTAGTTCATGTTCATCAACCTATTCCACCTAATCCGCGCAACTCCTCCATGGAATCAAACAATCCTAATGTCAATTCCAATAGCGGAGGCGCATTGCAGGCTGGAGAAGTAGGTGTTGCGGCTGAGACATTAGAAGAAAAGGATGATGTTGTACAGGGTAGCTGCAATGATGGAGACTTTTTTAAGTGTTATATTTGTTTTGACCTGGCTAATGATCCTATTGTGACTTCTTGTGGCCATTTGTTTTGTTGGCCATGCTTATATCAATGGTTGAATGTGCATTCAAATTCTAATGAGTGTCCAGTTTGCAAGGGTAAGGTGAATGTTAAGAATTGTATTCCAATATATGGAGGTGGAAACAATTCTCATGTAAGTGAAGCAAAGGATTCTGATCCCAAAATCCCTGCTAGGCCCCAAGCAAGTTTTGTTGATTATGTGAGGCAAACCTTTCAGGGAGATCCATTTTCACACCTTATGGAAATTATGATTCAGAGTGCTGGAAACACAGTCGGTCTTACTCAGGATCCATTCTGGCCATATAATCCTGAAAATGCTCGTCCTTCACAAGTTGAGGTTGAGATTATCGCTTCGTTAATGAGAAGGCTAAGGACATCACAAGACACGAGGATTGAGATGAATTTCATGGGGCCCCAAGATGATCTGGTGGGTTTGGTGAATAACAATGTTGGTGGAGGTTCTAGTAACCAAGAACACACTCCCCTTGTTGGTGATACTTCAAGAATACATAACTTAGTTCAGCCAAATGAATCAAACAATGCTCGTCATGAACAAGATGAAGATTCTACTTCCTTGGTGAGAATGTTCATGTCATCTCGAGGCCTGAGGGTAGATCTGGATTTTATAGAACCCCAGGATGATGTGGGTTTGTTGCATAACAATGTTGGTAGAGGTGGAAGAAATCAAAAACGTCGCCCCCCTGATGATGCTTCAATAGTACCTGATGTCGATAGAGGAGATTATCAAGTTCTAAAGCGTAGACGTTTCAACTGA 1212 0.4216 MAEENSNDVNPDVDRGSRPHPTTRPTSDRTIPIFEEFMRLGTNRRARWNWENFLNRSTETHVQVPQELVHVHQPIPPNPRNSSMESNNPNVNSNSGGALQAGEVGVAAETLEEKDDVVQGSCNDGDFFKCYICFDLANDPIVTSCGHLFCWPCLYQWLNVHSNSNECPVCKGKVNVKNCIPIYGGGNNSHVSEAKDSDPKIPARPQASFVDYVRQTFQGDPFSHLMEIMIQSAGNTVGLTQDPFWPYNPENARPSQVEVEIIASLMRRLRTSQDTRIEMNFMGPQDDLVGLVNNNVGGGSSNQEHTPLVGDTSRIHNLVQPNESNNARHEQDEDSTSLVRMFMSSRGLRVDLDFIEPQDDVGLLHNNVGRGGRNQKRRPPDDASIVPDVDRGDYQVLKRRRFN* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1214 403 CDD RING-HC_AtRMA_like 128 172 - -
Lja1g1214 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 189 IPR013083 -
Lja1g1214 403 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g1214 403 MobiDBLite consensus disorder prediction 8 22 - -
Lja1g1214 403 MobiDBLite consensus disorder prediction 374 388 - -
Lja1g1214 403 MobiDBLite consensus disorder prediction 362 388 - -
Lja1g1214 403 Pfam Zinc finger, C3HC4 type (RING finger) 129 170 - -
Lja1g1214 403 SMART ring_2 130 170 IPR001841 -
Lja1g1214 403 MobiDBLite consensus disorder prediction 73 98 - -
Lja1g1214 403 SUPERFAMILY RING/U-box 129 177 - -
Lja1g1214 403 MobiDBLite consensus disorder prediction 76 98 - -
Lja1g1214 403 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 59 336 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lja1g1214 403 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Lja1g1214 403 ProSiteProfiles Zinc finger RING-type profile. 130 171 IPR001841 -
Lja1g1214 403 PANTHER OS01G0830200 PROTEIN 59 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1214 Lja-Chr1 12557144 12558355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1214 94 280 C3H Transcription Factor Family AT3G58030 42.553 3.31e-40 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1214 K10666 - gmx:100811099 229.565