Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1213 ATGGCGGAGGAGAATTCTGATGCTTTGAACCCTAATTTGGATCGTGGTCCAAGATCTCATCCAACAACTAGGTCCACGTCCGCTAGAACAATTCCGATATTCGAAGAAATCTCGAGGCTCGGAGCAAATCGACGTACAAGATGGAATTGGGAGGGTTTTCTTAACCGTTCAACTGGAATTCATGTTCAGGTTCCACATGAACTGGTTCATGTTCATCAACCTATTCCACCTAATCCACACAACTCCTCCACGGAATCAAACCATCTTTATGCCAATTCCAATAGCGGAGGTGCATTGCAGGCTGGAGAAGGAGGTGTTGCGACCGAGACATCGAAAGAGAAGGATGATGTTGCAAAGGGCAGTTGCAACGGTAGAGACCTTTTTAAGTGTTATATTTGTTTTGACGTGGCCAATGACCCTATTGTGACTTCTTGTGGCCATTTATTTTGTTGGCCATGCATATATCAATGGTTGAATGTGCAGTCAAATTCTAATAAGTGTCCTGTTTGCAAGGGTAAGGTGAATGTTAAGAATGTTACTCCAATATATGGAGGTGGAAACAACTCTCATGTAAGTGAAGCAAAGGATTCTGATCCTAAAATACCTGCTAGGCCCCAAGGAAGGCGTGCTAATAATTTGAACCAAACCTTTGAGAGAGATCCATTTTCAATCCTTATGGAAATGATGGTTCAATGTGTTGGAAACTCAGTTGGTCTTACTCAAGATCCATTTCGGCCATATAATCCAGAAAATGCTCGTCCTGAACAAGTTGAGATTGAGATTATCACTTCGTTATTGAGAAGGCTAGAGGCATCACAAGACACGTGGATTAAGATGATTTACATGGGACCCCGAGATGATGTGGTGGGTTTGGTGAATAACAATGTTGTTAGAGGTTCTAGTAACCAAGAACATACTCCTCTTGTTGATGATGCTTCAAGAACACATAATTTAGTTCAGCCGAATGAACCAAACAATGCTCGTCATGAACAAGATGAAGTTACCACTTCCTTGCTGAGAATGTTCATGACATCTCGAGGCATGAGGGTAGAGCTGGATTTTGTAGAACCTCAAAATGAGGTGGTGGGTTTGTTGCATAACAATGTTGGAAGAGGTGGAAGAAACCAAGGACATCAACCCCATGTTGGTGATGCTTCAAGAGTACCTGATGTCGATAGTGGAGATTATCGAGCTCTAAGGCGTAGACGTTTGAATTGA 1218 0.4245 MAEENSDALNPNLDRGPRSHPTTRSTSARTIPIFEEISRLGANRRTRWNWEGFLNRSTGIHVQVPHELVHVHQPIPPNPHNSSTESNHLYANSNSGGALQAGEGGVATETSKEKDDVAKGSCNGRDLFKCYICFDVANDPIVTSCGHLFCWPCIYQWLNVQSNSNKCPVCKGKVNVKNVTPIYGGGNNSHVSEAKDSDPKIPARPQGRRANNLNQTFERDPFSILMEMMVQCVGNSVGLTQDPFRPYNPENARPEQVEIEIITSLLRRLEASQDTWIKMIYMGPRDDVVGLVNNNVVRGSSNQEHTPLVDDASRTHNLVQPNEPNNARHEQDEVTTSLLRMFMTSRGMRVELDFVEPQNEVVGLLHNNVGRGGRNQGHQPHVGDASRVPDVDSGDYRALRRRRLN* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1213 405 CDD RING-HC_AtRMA_like 128 172 - -
Lja1g1213 405 Pfam Zinc finger, C3HC4 type (RING finger) 129 170 - -
Lja1g1213 405 SUPERFAMILY RING/U-box 126 183 - -
Lja1g1213 405 SMART ring_2 130 170 IPR001841 -
Lja1g1213 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 190 IPR013083 -
Lja1g1213 405 MobiDBLite consensus disorder prediction 72 118 - -
Lja1g1213 405 MobiDBLite consensus disorder prediction 187 208 - -
Lja1g1213 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 62 347 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lja1g1213 405 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Lja1g1213 405 MobiDBLite consensus disorder prediction 76 99 - -
Lja1g1213 405 ProSiteProfiles Zinc finger RING-type profile. 130 171 IPR001841 -
Lja1g1213 405 PANTHER OS01G0830200 PROTEIN 62 347 - -
Lja1g1213 405 MobiDBLite consensus disorder prediction 367 395 - -
Lja1g1213 405 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1213 Lja-Chr1 12528348 12529565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1213 74 235 C3H Transcription Factor Family AT3G58030 40.782 1.31e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1213 K10666 - gmx:100811099 242.276