Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1211 ATGGGGGAAGAGAATTCTGATGCTATGAACCTAGATTTGAATCTGAGTCCAGGTCCTGAGCCAGCAACCAATGAAGCTATGAACTTGGATGCTTGGGTTGAGGAGCCAATTCATAGAATCAGTGAAGCTGTGAGGCTCAGGGCTCGGCAGAGATGGAGATGGCGGCAGCATCTTCATATCCCTCCACCTGAAGTTCATTTTCACATTCCACCTGAGGCAGTTCATGTTCATCTTCCTATCCCTCATCTTCCTATCCCTCCTGAAGCGCACAATATCTCCATGGAATTGAACAATTTTTTGGTGAATTCTGGTCATGGGGGCGCATTGCAGACTGGGGAAGGAAGTGTGGCGGCTGAGGGGAGACTGGAGGAGGTGCCGAAAGCGTGTGAGAATATCAATGGTGTCTCGGTTGATGAAACATCGCAGAAGAAGGATGATGTTGAAAGGGGTAGTGGGAATGATGGGGATTTTTTTGACTGTAATATCTGCTTGGACCTGGCCAGGGAACCTGTTGTGACTTGTTGTGGCCATTTGTTTTGTTGGACATGTGTGTATCGATGGCTGCATCTGCATTCGGATGCGAAGGAGTGTCCAGTTTGCAAGGGAGAGGTGACGCTTAAGAGTGTAACACCAATATATGGCCGTGGAAACAATGGTCGTAGCAGTGAGGAGGATTCCACTCTTAAAATCCCTCCTAGGCCTCAGGCAAGGCGTGTTGAAAGTCTAAGGCAAACCATTCAGAGAAATGCATTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATAGATCTTACTCGGGATTTAGTTCAGCCAAATGAACCGGACAATGCTCGTGAGCAAGCTGAGAGAACCACTTCTTTGCTGAGTAGGTTCTTGACATCTCGAGGTATGCGGAGAGAGCAGAATCCTGTGGCACCCCAACCCCAAGATGATGTAGTTGGTTTGCCACAGAACAATGTTGGTAATGCTGCTGAGGTAGGGGATAACCGCAGGGTGCAATCCCTATTGCTTCGAAGGACTCAATCACATAGAGCAACACTTACTACTCTTTCATCAGCACTGACTTCTGCTGAAAGATTATTTGAAGCATATCTCCGTAGCAATCCATTAAATAGAAACCAAGAACAGCCTCCTCCTGTTGAGGACAGAGATTCCTTTTCAAGCATTGGTGCTGTCATAAATTCTGAGAGTCAAGTGGACACTGCTGCAGAAATTGATTCCATGGTATCCTTATCAACATCCTCCTCTAGGAGGAGAAATGATGCTTCCAGAGTGTCTGATGTGGATAGTGGAGATTCTCGTCCTCCAAGGCGCCGGCGTCTGAACTGA 1341 0.475 MGEENSDAMNLDLNLSPGPEPATNEAMNLDAWVEEPIHRISEAVRLRARQRWRWRQHLHIPPPEVHFHIPPEAVHVHLPIPHLPIPPEAHNISMELNNFLVNSGHGGALQTGEGSVAAEGRLEEVPKACENINGVSVDETSQKKDDVERGSGNDGDFFDCNICLDLAREPVVTCCGHLFCWTCVYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNNGRSSEEDSTLKIPPRPQARRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDLVQPNEPDNAREQAERTTSLLSRFLTSRGMRREQNPVAPQPQDDVVGLPQNNVGNAAEVGDNRRVQSLLLRRTQSHRATLTTLSSALTSAERLFEAYLRSNPLNRNQEQPPPVEDRDSFSSIGAVINSESQVDTAAEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRPPRRRRLN* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1211 446 MobiDBLite consensus disorder prediction 404 446 - -
Lja1g1211 446 Pfam Zinc finger, C3HC4 type (RING finger) 160 200 - -
Lja1g1211 446 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g1211 446 ProSiteProfiles Zinc finger RING-type profile. 160 201 IPR001841 -
Lja1g1211 446 MobiDBLite consensus disorder prediction 424 446 - -
Lja1g1211 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 250 IPR013083 -
Lja1g1211 446 CDD RING-HC_AtRMA_like 158 202 - -
Lja1g1211 446 ProSitePatterns Zinc finger RING-type signature. 175 184 IPR017907 -
Lja1g1211 446 SUPERFAMILY RING/U-box 155 213 - -
Lja1g1211 446 PANTHER OS01G0830200 PROTEIN 16 446 - -
Lja1g1211 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 16 446 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lja1g1211 446 SMART ring_2 160 200 IPR001841 -
Lja1g1211 446 MobiDBLite consensus disorder prediction 404 423 - -
Lja1g1211 446 MobiDBLite consensus disorder prediction 215 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1211 Lja-Chr1 12500915 12503338 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1211 1 437 C3H Transcription Factor Family AT3G58030 51.522 1.17e-134 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1211 K10666 - gmx:100811099 639.032