Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1210 ATGGAAGAAGAGAACTCTGATCCTATGAACCTTAATTTGGATCTAGGTCCAAGCTCTGAGCTGGAGACTTTGGACATTCAAGCTCTCCTGGAGGAAAACAATTCTGGTGCTATGAACCTTGATTTGGTTCTTGGTCCATGTTCTGAGCTAACGACTGGATCCATAACCAATGAGGTTTTTCAAGGAACCAATGAAGCTTCAAGGCTGAGAGCACAACCTAGAGGGAGACATCCTCTCACCCCTCAACCTGAAGCAGGTCAAGATTATTTTCCTGACCCACCTGAACCCCACAATATCTCAAGGGATTGTGCATTACAGGTTGGGGAAGGAAGTGTGGTGGTTGAGACAACAAAGAAGAAGGATGTTGTTGAAAAAGGTACTGACTCTTATGGGAAATTTTTTGAATGTAGTATTTGTTTGGATATGGCTAAGGACCCTGTTGTTACTTCTTGTGGCCATTTGTTTTGTTGGCGATGTTTATTTCAATGGTTTCATGTGCATTCGAATTCTAACGAGTGCCCAAATTGCAAGGGAGTGGTGATTCTTAGGAATGTCACTCCAATATATGGTCCAAGAAATGATGCTGATGTGATTGAACAGGAAGGTTCCAACCTTGAAATCCTTCCTAGGCCCCAAGCAAGGCGTGTTAATAGTCTGAGTCAAACACTTGAGAGAAATACAGTTCCGACCCCTATTGAAGAGATGCTTCAACGTGGTGCGAATATAAATGGTCTTACTCAAGATTTAGTTCAGTTCCATGAACCAGAAAATGCCTATCATGAACAAGCTGAGATAGACACTCCCTTGCTGAGCAGTTTCTTGCCACCCCAAGAAGATCCTCCCCTTTTTGATGACCTTGACTCCTTCTTAAGCGATATCATGAATTCAGGGAGTGACTTGAACATTGATGTAGAAATGAATTCCATGGAATCCTTGTCAGCGGCTTCCTCTAGGAGGAGAAATAATAGTACTTCAGAAGTGCCTAATGTGAATGATGAAGATTATCAAGCTCCTAGGCCAGACGTTTGA 1029 0.4266 MEEENSDPMNLNLDLGPSSELETLDIQALLEENNSGAMNLDLVLGPCSELTTGSITNEVFQGTNEASRLRAQPRGRHPLTPQPEAGQDYFPDPPEPHNISRDCALQVGEGSVVVETTKKKDVVEKGTDSYGKFFECSICLDMAKDPVVTSCGHLFCWRCLFQWFHVHSNSNECPNCKGVVILRNVTPIYGPRNDADVIEQEGSNLEILPRPQARRVNSLSQTLERNTVPTPIEEMLQRGANINGLTQDLVQFHEPENAYHEQAEIDTPLLSSFLPPQEDPPLFDDLDSFLSDIMNSGSDLNIDVEMNSMESLSAASSRRRNNSTSEVPNVNDEDYQAPRPDV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1210 342 CDD RING-HC_AtRMA_like 134 178 - -
Lja1g1210 342 MobiDBLite consensus disorder prediction 65 89 - -
Lja1g1210 342 PANTHER OS01G0830200 PROTEIN 71 271 - -
Lja1g1210 342 MobiDBLite consensus disorder prediction 311 342 - -
Lja1g1210 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 205 IPR013083 -
Lja1g1210 342 ProSitePatterns Zinc finger RING-type signature. 151 160 IPR017907 -
Lja1g1210 342 SMART ring_2 136 176 IPR001841 -
Lja1g1210 342 MobiDBLite consensus disorder prediction 311 331 - -
Lja1g1210 342 ProSiteProfiles Zinc finger RING-type profile. 136 177 IPR001841 -
Lja1g1210 342 SUPERFAMILY RING/U-box 130 194 - -
Lja1g1210 342 Pfam Zinc finger, C3HC4 type (RING finger) 135 176 - -
Lja1g1210 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 71 271 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1210 Lja-Chr1 12493369 12494397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1210 30 237 C3H Transcription Factor Family AT2G42030 39.506 2.18e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1210 K10666 - gmx:100811099 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1210 1 12493369 12494397 Lja1g1210 1 12493369 12494397 ECH