Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1208 ATGGAGCTTGCTTTGAGCTTGGGCGACGCACGGAAATCGTTCTCTTTGCTTGAAAATCTCACAAAATCATCCAACAAAGACGCTCTAGGATTCTCCATACCACAAGAAGAAACTGGAAAATCTTCAGAAGAGAAAAGGGGTTCCTCAGATCCACCCGTTCAGCTAGATCTTCTTCCTTCAACACCGGTTCTTCGACCCCACCCACCTTCTTCACACATTCGAATTCCATGGCTCACCGATGCACTGGGTATTGAACGGGTCACACCGGAAGTACCGGCAAGGGTGTTGAATAATGTGAACCGGTTACCGTTGCTGCCGGCGGTGGAGGTCGACACTGATGACGGTGCTGCGATTTCATCTCCAAACAGTGCGGTTTCATCTTTTCAGATGGATTTTCTTCTCATAAACAGTAATGCAGATGCAGCCATGAACAAAAGGGATTATCATGAGTTTGAGAGTGCAGACAGAGGTAGCGACGACGATGAAAACGGCTCAACTCGGAAGAAACTCAGACTCACTAAGCAACAATCAGCTTACCTGGAAGAGAGCTTCAAAGAACACACCACTCTCAACCCCAAGCAGAAACTTGCTCTTGCCAAACAGTTAAATCTACGTCCTCGCCAAGTTGAAGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAGGTGGATTGTGAGTACTTAAAGAGATGTTGTGAGACTCTAACAGAAGAGAACAGGAGGTTGCAGAAGGAGCTACAAGAGCTGAGGGCTTTGAAATCTTGTCAACCATTCTACATGCAGCTTCCAGCTACCACCCTCACCATGTGTCCCTCTTGTGAAAGAGTCGCCACCAACACCACCACCGGAGCCGCCAACAACAACCAAACAACTTCCCCCACCGCCACAGCCAACAACAACAATAACAATAATAACGGTTCTCAAATCCCTGCCGCTTTGTCTCTTGGCAAGCCTAAAATGTCACCATTTCCAAATGGTCAAGCCTCATGA 1002 0.475 MELALSLGDARKSFSLLENLTKSSNKDALGFSIPQEETGKSSEEKRGSSDPPVQLDLLPSTPVLRPHPPSSHIRIPWLTDALGIERVTPEVPARVLNNVNRLPLLPAVEVDTDDGAAISSPNSAVSSFQMDFLLINSNADAAMNKRDYHEFESADRGSDDDENGSTRKKLRLTKQQSAYLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKSCQPFYMQLPATTLTMCPSCERVATNTTTGAANNNQTTSPTATANNNNNNNNGSQIPAALSLGKPKMSPFPNGQAS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1208 333 MobiDBLite consensus disorder prediction 150 172 - -
Lja1g1208 333 CDD bZIP 216 255 - -
Lja1g1208 333 ProSiteProfiles 'Homeobox' domain profile. 163 223 IPR001356 GO:0003677
Lja1g1208 333 Coils Coil 229 256 - -
Lja1g1208 333 MobiDBLite consensus disorder prediction 26 70 - -
Lja1g1208 333 MobiDBLite consensus disorder prediction 285 333 - -
Lja1g1208 333 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 305 - -
Lja1g1208 333 MobiDBLite consensus disorder prediction 285 315 - -
Lja1g1208 333 Gene3D - 159 228 - -
Lja1g1208 333 PANTHER - 5 305 - -
Lja1g1208 333 SMART HOX_1 165 227 IPR001356 GO:0003677
Lja1g1208 333 CDD homeodomain 167 224 IPR001356 GO:0003677
Lja1g1208 333 MobiDBLite consensus disorder prediction 150 169 - -
Lja1g1208 333 SUPERFAMILY Homeodomain-like 158 224 IPR009057 -
Lja1g1208 333 SMART halz 223 266 IPR003106 GO:0006355|GO:0043565
Lja1g1208 333 Pfam Homeodomain 167 221 IPR001356 GO:0003677
Lja1g1208 333 Pfam HD-ZIP protein N terminus 98 128 IPR006712 GO:0005634
Lja1g1208 333 ProSitePatterns 'Homeobox' domain signature. 198 221 IPR017970 GO:0000981|GO:0006355
Lja1g1208 333 Pfam Homeobox associated leucine zipper 223 257 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1208 Lja-Chr1 12420043 12422523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1208 98 279 Homeobox Transcription Factor Family AT3G60390 60.714 6.74e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja1g1208 Homeodomain 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1208 K09338 - gmx:100776113 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1208 1 12420043 12422523 Lja1g1208 1 12420043 12422523 ECH
Lja1g1208 1 12420043 12422523 Lja5g2316 5 42025224 42027009 PCT